Cuculus canorus (common cuckoo): 104067275
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Entry
104067275 CDS
T08597
Symbol
RPAP1
Name
(RefSeq) RNA polymerase II-associated protein 1
KO
K20826
RNA polymerase II-associated protein 1
Organism
cuca
Cuculus canorus (common cuckoo)
Brite
KEGG Orthology (KO) [BR:
cuca00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cuca03021
]
104067275 (RPAP1)
Transcription machinery [BR:
cuca03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Others
104067275 (RPAP1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RPAP1_C
RPAP1_N
Motif
Other DBs
NCBI-GeneID:
104067275
NCBI-ProteinID:
XP_009568282
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Position
5:49791729..49833212
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AA seq
1435 aa
AA seq
DB search
MLLRPKPGESEADLLHFQNQFLAARASPAVKIVKKADKRKGKEESTGAERPPLQDSKDVV
MLDDFPDVLPALTPGPPKKSKNKSSCVHFEDEDPEERLECHDQHITAVFSKIIERDTSAV
AVTMPVTTEDAFPRTFHRSEIKSEVKMGSGKKSIFAQKMAARRAAEKASRAPSTECMQIR
STAPNALDPGELTGQVPVPSITDSKAGDFLTSQQPCLITGEGLGSQNSEQEAQAIHKENL
EKLRSMSEEEILQEQEKLLAQLDSGLVAFLKSRRDGSEGLKKELKMEQSRTEEFVESLPA
AQRGVGSSLSMQELCLEESIRKEENRKEEITEDDLPVKPKKEWIHMDNVEFEKLEWMKDL
PSLRQKKTKKGMQARFSLKGELIPADADLPTHLGLHHHGEEAERAGYSLQELFHLSRSQV
IQQRTLALQVLGHIVEKAKAGEFAASLKGSILRLLLDAGFLFLLRFSLDDAVENVMAASI
GALRALLVSLDDEKYLDWTFSWYQGIVTFPFVPTNEVEEEEEEEDLNVTEKSQDKKLKDE
TKPDPEVACYDVVKGLLKTRIQHRLRYILEVVRPVPTVVLDILHILTHIARHSSEACSQL
LDCPRLIETIVREFLPTQWDPQVAEPGHLLTSLHGVACSIAMKFIRVLASGGRNATARLF
NRFEMKSRLSRFIAEDPLDLPLPREEAIKISTEAFRLWAVAAGYGQACDLYRDLYPMLVR
ILQSLPELLSTCRRKSPMTELSVQRATAVVTMLIHMTQTAGYTAELQAKLNSDSSEDSEQ
IPPPPVTWNQVSGLQPFLEASLKKFLQEISQTETWQTLQPLTTTYVIYLAVYYSAYSQQP
SVNPVDCLEELERLTSEVLQPLLSQPAIDSMWDLLRPCSALCNPLSCSQAPESVCSIASL
SCMGGKPPLSLVGSKSPFAFLTALLFLINSITRIHKGLTSKYRSVLDFRGLKDYLHQSWQ
TGPPSVTPSSAWILRHEYHLQYFVLALARRMASTCPDYTQHASLHHCVAMALLSRLLPGS
EHLAYEVLLDLAFNPEFLPEGKAGGPEAADFSDILQLGTSAKLAQPGSAAAFSSKSTRGA
LLRESYENLPLIRSCYISHFVHLQPNLLRSQASYQGRNYLIQSMLLPEVRGPILPSDWPF
FPLINLYNKVTNAETRGAVLSSLPLDLVNTVTWNLQWVLLLETWRAKTLQSIPTAAKLAR
LMCVFLTGSDLFLETLIHRYTAALLSVYCQPKALDSLNLDAPLPGLASFHDLYISLLEQF
EGVSFGDPLFGVFVLLPLQKRFSVHLRLSVFGEHTSILRALGVPLQQFPVPLERYTSPSE
DNLNLLRLYFRTLVTGALRHTWCPVLYVVAVAHVNSFIFSQDSTTQETDAARKSMLQKTW
LLVDETLKKHLLYYRLLNAESSLGFDLYEQLPPMRLKYLQMVTRKENNENAPALV
NT seq
4308 nt
NT seq
+upstream
nt +downstream
nt
atgttgttgagaccaaagcctggggagtctgaggcagacctgctgcactttcaaaaccag
ttcctggcagccagagcttcacctgcagtgaagattgtgaagaaagcagataagaggaag
gggaaagaagagagtacaggagccgagagacctccactacaggacagcaaggatgtagtc
atgttggatgattttcccgatgttctcccagctctaaccccaggtcctccaaagaagtct
aagaacaaaagttcctgtgtccactttgaggatgaagatccagaggaaagactggaatgt
catgatcaacacattacagcagtcttcagcaaaattattgaacgagacacaagtgcagta
gcagtgaccatgccagtgaccacagaagatgcatttccgaggacatttcaccgctctgag
ataaaaagtgaggtgaagatgggatctggaaaaaaaagcatcttcgcacaaaagatggca
gctagaagagctgctgaaaaggcatcacgagctccctctactgagtgcatgcaaataaga
tcaactgccccaaatgccttggatcctggggaattgacaggacaggtgcctgtccccagc
atcacggatagtaaagctggtgactttttgacctctcagcagccttgtctcataacggga
gagggtcttggaagccaaaacagtgagcaggaagctcaagctattcacaaagagaacttg
gagaagctgcggtccatgtctgaggaagagatcctgcaggaacaggaaaagcttctggct
cagctggattctggtttagttgctttcttaaagtcacgacgtgatggcagtgaaggcctg
aaaaaggaactaaaaatggaacagagcagaacagaggagtttgtggaatctctgcctgcg
gctcagcgtggtgtaggatcatccctttccatgcaggagttatgtctggaagaatctata
aggaaggaagaaaataggaaggaagaaattacagaggatgatctacctgtgaagcccaag
aaggaatggattcacatggacaatgtggagtttgagaagctggaatggatgaaagattta
ccctcactccgacagaagaaaacaaaaaagggaatgcaagctcgattcagtttaaaagga
gaattaattcctgcagatgctgatttaccgacacatctaggcctgcatcaccatggagaa
gaggcagagagggctggttattctctacaagagctctttcatttgtctcgcagccaggtt
attcaacagaggacactggctctacaggtcttgggtcatattgttgaaaaggccaaggct
ggagaatttgctgcctccttgaagggcagcattctgcgcctgttgcttgatgctgggttt
ctcttcttgctgcgtttctcgctggatgatgcagtggaaaatgtcatggcagcatctatt
ggtgctctcagggctctgctggtgtcactcgatgatgagaaataccttgattggaccttc
tcatggtaccaagggattgttacattcccctttgtccctaccaatgaggtggaggaggag
gaggaggaagaagatttaaatgtaacagagaaatctcaagataaaaaattaaaggatgaa
accaagccagatccagaagtggcctgttatgatgttgtaaaggggcttttgaagacacga
atccagcaccggctgaggtacatcctggaggtggtacgacctgttccaacagtagtcctg
gatatactgcacattcttacccacatagcaaggcactcctctgaagcatgcagccagctg
cttgactgtcctcggttgattgagaccattgtcagggaatttctccctactcaatgggat
ccccaggtggctgaaccagggcatttactcaccagcctccatggagttgcttgctccatt
gctatgaagttcatcagagtgttggcatctggaggccgaaatgcaacagctagactgttt
aacagatttgaaatgaaaagtcgtttaagtcgttttatagctgaagacccactggatctg
cccctgccaagggaagaagccatcaagataagcactgaagccttccggctgtgggctgtg
gctgctggctatggtcaggcctgtgatctctacagggatctttaccctatgctggtgagg
atactccagtccctgcctgaattgctgagcacttgcagacgaaagagccctatgacggag
ttgtctgtccagcgagctacagcagtagttactatgctgatacacatgacgcaaacagca
ggctacacggcagagctgcaggccaagctgaacagtgatagctcagaagatagtgaacag
attccacctcctccagtaacatggaatcaagtgtcaggcttacagcccttccttgaggcc
agtctgaaaaaatttcttcaggagatatctcagacagaaacttggcaaactcttcagcct
ctgaccacaacttatgtgatctacttggcagtttattacagtgcttacagccaacagcca
tcagtcaatccggttgattgcttagaggaactggaacgtttgacatctgaggtgctgcag
cctcttctcagccagccagccatagacagcatgtgggacttactcaggccatgttctgct
ttgtgcaaccctctgtcctgttcccaagcaccagaatctgtctgcagcattgcatctctg
agttgcatgggaggcaaacctcctttgagcctggttggatccaagtcgcctttcgccttc
ctcactgccctcctatttcttatcaatagcatcactcgcattcacaaaggcctgaccagc
aagtacaggtctgtgctggacttcagaggcttgaaggattatctgcatcaaagctggcag
actggacctccctctgtaactccttcatctgcatggatcctgcgccatgaatatcatctg
cagtacttcgtgctagctctggctcggcgaatggcaagcacttgtccggattacacacag
catgcctcactccatcactgtgttgccatggcattgctaagccgtctgttgccagggagt
gagcatctggcttacgaggtcctgctagatcttgcctttaatccagagtttcttcctgaa
gggaaagctggagggccagaagcagctgacttctctgatatcctacaactgggtaccagt
gccaaactggcacagccgggctctgcagcagcattttcttcaaagtctactcgtggtgcc
ctgctgagagaatcgtacgagaatctgcctctcatccgctcctgctacatttctcatttt
gttcacttgcagcctaaccttctgcgttcccaagcatcctaccaaggacggaattacctc
atccagtcaatgctgcttcctgaagtcagagggcccatcctgccttcagattggccattc
tttccgcttatcaacctctacaacaaagtgactaatgcagagacacgtggggctgtactg
agctctctcccacttgatcttgtcaacactgtgacctggaacctccagtgggtcttgttg
ctagaaacctggcgggctaaaacacttcagagcatccctactgctgccaaacttgcacgg
cttatgtgtgtgttcctcacaggcagtgacctctttctagaaacactgatccaccgctac
acagctgcccttctctctgtgtattgccaacccaaggcactggactccctaaacttggat
gcccctctccctggtttggcgtccttccacgatctctacataagtcttctggagcagttt
gaaggtgtctcctttggagatccgctctttggagtctttgttctcctacctctacagaag
cgtttcagtgttcatctgcgtctctctgtttttggggagcacacaagtatcctgcgagca
ctgggagtgccactccagcagtttcctgtgcctctcgagcgatatacttccccttcagag
gataacctgaacctcctgcgactctacttccgaacactggttactggtgcgctgcgccac
acctggtgccctgttctttacgtggtggctgtagctcatgtgaacagctttattttctct
caagacagcacaacacaggagactgatgctgctcggaaaagcatgctgcagaagacatgg
ctgttggtggatgagaccttgaaaaagcacctgctgtactacagactgctgaatgcagag
agctctttgggatttgatctttatgagcagctccctcccatgcgactgaagtacctgcag
atggtgacacggaaagaaaataatgagaatgcaccagcactagtatag
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