Cuculus canorus (common cuckoo): 104067369
Help
Entry
104067369 CDS
T08597
Symbol
VPS39
Name
(RefSeq) vam6/Vps39-like protein isoform X1
KO
K20183
Vam6/Vps39-like protein vacuolar protein sorting-associated protein 39
Organism
cuca
Cuculus canorus (common cuckoo)
Pathway
cuca04140
Autophagy - animal
cuca04148
Efferocytosis
cuca05132
Salmonella infection
Brite
KEGG Orthology (KO) [BR:
cuca00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
104067369 (VPS39)
04148 Efferocytosis
104067369 (VPS39)
09160 Human Diseases
09171 Infectious disease: bacterial
05132 Salmonella infection
104067369 (VPS39)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
cuca04131
]
104067369 (VPS39)
Membrane trafficking [BR:
cuca04131
]
Endosome - Lysosome transport
Tethering complex
Hops complex
104067369 (VPS39)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Vps39_1
CNH
zf-Vps39_C
TPR_Vps41
Clathrin
SAM_CEP-1_C
EcoR124_C
DUF4145
Motif
Other DBs
NCBI-GeneID:
104067369
NCBI-ProteinID:
XP_053923198
LinkDB
All DBs
Position
5:complement(53686738..53710966)
Genome browser
AA seq
884 aa
AA seq
DB search
MHDAFEHVPILEKLPLQIDCLAAWEEWLLVGTKQGHLLLYRIKKDIGEVMSSESVCCNRF
EVTLEKSNKNFSKKIQQIHVVSQFKILVSLLENNIYVHDLLTFQQITTVSKAKGASLFTC
DLQQSDTGEEVLRMCVAVRKKLQLYFWKDREFHELQGDFSVPDVPKSMAWCENSICVGFK
RDYYLIRVDGKGSIKELFPTGKQLEPLVAPVADGKVAVGQDDLTVVLNEEGVCTQKCALN
WTDIPIAMEHQPPYIIAVLPRYVEIRTFEPRLLVQSIELQRPRFITSGGTNIIYVASNHF
VWRLIPVSIATQIQQLLQDKQFELALQLAEMKDDSDSEKQQQIHHIKNLFAFNLFCQKRF
DESMQVFAKLGTDPTHVMGLYPDLLPTDYRKQLQYPNPLPGLSGAELEKAHLALIDYLTQ
KRSQLVKKLNDSDHQSSTSPLMEGTPTIKSKKKLLQIIDTTLLKCYLHTNVALVAPLLRL
ENNHCHIEESEHVLKKAHKYSELIILYEKKGLHEKALQVLVDQSKKANSPLKGHERTVQY
LQHLGTENLHLVFSYSVWVLRDFPEDGLKIFTEDLPEVEALPRDKVLSFLIENFKSLTIP
YLEHIIHVWEETGADFHNCLIQLYCEKVQGLMKEYLRSFPADKTPVPAGEEGGDLGDYRK
KLLLFLEKSSWYEPSRLISDFPFDGLLEERALLLGRMGKHEQALFIYVHILKDTNMAENY
CHKHYDRNKDGNKDVYLSLLRMYLSPPSVHCLGPIKMEVLEPQANLQAALQVLELHHSKL
DTTKAINLLPANTQISEIRIFLEKVLEENAQKKRFNQVLKNLLHAEFLRVQEERILHQQV
KCIITEEKVCTVCKKKIGNSAFARYPNAIVVHYFCSKEVNTLDT
NT seq
2655 nt
NT seq
+upstream
nt +downstream
nt
atgcacgacgccttcgagcacgttccaatcctagagaagctgccgctgcagatcgactgc
ctggcggcctgggaggaatggctccttgttggtaccaaacaagggcatcttcttctttac
aggatcaagaaagacataggagaggttatgtcatcagaaagtgtctgttgcaataggttt
gaagtgacactagagaagtccaacaagaacttctcgaaaaagattcagcagattcatgtt
gtttctcagtttaaaattctggtcagtctattagaaaataatatttatgtccatgacctg
ttgacgtttcaacaaatcaccacggtttccaaagcaaaaggtgcatctctcttcacttgt
gatcttcagcagtcagatacaggagaagaggtgctgagaatgtgcgtggcagtgcggaag
aagctacagctttatttttggaaagacagagagttccatgaactacagggagacttcagc
gtacctgatgtacccaagtctatggcatggtgtgaaaactctatctgtgtaggcttcaag
agggactattaccttatacgggtggatgggaaaggatccatcaaagaactgtttcccaca
gggaagcagctagaacctttggtagctcctgtagcagatggaaaagttgcagttggccaa
gatgatctaacagttgtgctcaatgaagaaggagtctgtacgcagaaatgtgccttgaat
tggacagatattcctatagccatggaacaccagcctccatatatcattgctgttctgcca
cggtatgtggagatccgtactttcgaaccccggctgctggtacagagtattgagctgcaa
agaccacgtttcatcacgtctggaggcacaaatattatatatgtggcaagtaatcacttt
gtttggcggctcattccggtgtccatagccacacagatccagcagcttctgcaggacaaa
cagtttgagttggctttgcagttggcagaaatgaaagatgattcagatagtgagaagcag
caacaaattcaccacataaagaacctctttgccttcaacctcttctgccagaagcgcttt
gatgaatccatgcaagtttttgccaagcttggtacagatcccactcatgtgatgggtctg
tatcctgacctcctgcccacagattacaggaaacagctacagtatcccaaccccctgcca
gggctgtctggtgcagagctggagaaggcacacttagctctgatagactacctaactcaa
aaaagaagtcagctggtgaagaagctaaatgattctgaccatcagtccagtacttcacca
ctcatggaaggaacacccactatcaaatccaaaaagaagctgctacaaatcattgatacc
accctgttaaagtgttacctccatacgaatgtagcactggtggcaccattactacgtttg
gagaacaatcactgccatattgaggagagtgagcatgtactaaagaaggcacacaaatat
agtgagctgataatactgtatgaaaagaaaggtctgcatgagaaagcattacaggtactt
gtggatcaatcaaagaaagccaactcacctttgaagggtcatgagaggacagtgcaatat
ctgcagcatttgggcacagaaaacttgcacttggtattttcctactctgtctgggtgcta
agagattttcctgaagatggactgaagatatttacagaagacctccctgaagtggaagct
ttaccacgagataaagtgcttagttttttgatagaaaattttaaaagcttgactattcct
tatctggaacacatcattcatgtctgggaagaaactggtgcagacttccacaactgtctg
atccagctgtactgtgagaaagtgcagggcttaatgaaagaatatctccgttctttccct
gcagataaaactccagtgcctgctggggaggaaggaggagacttgggggattaccggaaa
aagcttctactttttctggagaagtctagctggtatgaacctagtcgactaattagtgac
ttcccctttgatggtctcctagaagaacgtgctctgctcttgggtcgcatggggaagcat
gagcaagctctgtttatatatgttcatattttgaaggataccaacatggctgaaaactac
tgccataaacattacgacagaaacaaagatggcaacaaagatgtctatctgtcactgctc
cggatgtatctttccccacctagcgttcattgtctgggaccaatcaagatggaggtgctg
gagcctcaagccaatctacaggctgctctgcaggttttggaactgcatcacagcaaactg
gataccaccaaggcaataaacctactcccagcaaatactcagattagtgagattcggatc
ttcttagagaaagtacttgaagaaaatgcccagaaaaagagatttaatcaagtcctgaag
aatcttctccatgctgaatttctgagggtccaggaagagcggatcttgcatcagcaagtg
aagtgcattattacagaggagaaggtgtgcactgtatgtaaaaaaaagataggtaacagt
gcgtttgctcgataccccaatgcaatagttgtgcattatttctgctccaaagaagtcaac
acgttagacacctga
DBGET
integrated database retrieval system
