Cuculus canorus (common cuckoo): 104067402
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Entry
104067402 CDS
T08597
Symbol
BARD1
Name
(RefSeq) BRCA1-associated RING domain protein 1 isoform X1
KO
K10683
BRCA1-associated RING domain protein 1
Organism
cuca
Cuculus canorus (common cuckoo)
Pathway
cuca03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
cuca00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
104067402 (BARD1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cuca03019
]
104067402 (BARD1)
04121 Ubiquitin system [BR:
cuca04121
]
104067402 (BARD1)
03036 Chromosome and associated proteins [BR:
cuca03036
]
104067402 (BARD1)
03400 DNA repair and recombination proteins [BR:
cuca03400
]
104067402 (BARD1)
Messenger RNA biogenesis [BR:
cuca03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Negative regulators of mRNA 3' end processing
104067402 (BARD1)
Ubiquitin system [BR:
cuca04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
BRCC complex
104067402 (BARD1)
Chromosome and associated proteins [BR:
cuca03036
]
Eukaryotic type
Centrosome formation proteins
Centrosome duplication proteins
Regulators of centriole replication
104067402 (BARD1)
DNA repair and recombination proteins [BR:
cuca03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-core complex
104067402 (BARD1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-RING_6
Ank_4
Ank
Ank_2
Ank_5
Ank_3
BRCT
BRCT_2
zf-RING_5
zf-C3HC4_2
zf-C3HC4_4
zf-C3HC4
ANK_LRRK2
zf-RING_UBOX
NIBRIN_BRCT_II
RTT107_BRCT_5
PTCB-BRCT
zf-rbx1
zf-RING_10
Prok-RING_4
Motif
Other DBs
NCBI-GeneID:
104067402
NCBI-ProteinID:
XP_053925525
LinkDB
All DBs
Position
6:complement(39475853..39534009)
Genome browser
AA seq
786 aa
AA seq
DB search
MRAALRGRSGNAVAPGGQPRSAAPMEPPWGRTRAALARLETALSCSRCAGVLRKPVSLGQ
CEHVFCLSCVGDSVGKECPVCHMPAWVQDAQINRQLDNMIQLCSKLRHLLGVDTSDSTED
TSTPTVSDCEKKSKKEQIKMWFSPRSKKIRCILNKSQPETKSNDLCQDTSSVYDYFPSPP
HEKPSDPIKKPSQRQNKKMKKKRLADINKVWSLEKPEQKGGGEEKTPKEKCVTICSQPVV
FCTPEPESPEELLQQESGKEADSSKNTEHVGTPPQAKSSEKKENSEAACPAQVSEEKNPA
PETSQSVENEITPLKRGREHSGLPVTPQSKRPRRSERSTVGKGGRQADCLKESAHGHPIS
PVSEHKTPIQSSSSVSKVTNTVMRTRSSAVIQAVNSPSLSKPPSTPSTSKTCNQVGIPHS
PSVLKSPGGNTIARRNYKGETLLHVASIKGDLAAVEELLKNGADPNVKDNAGWTPLHEAC
NHGHKEVVELLLQHKALVNTTGYQNDSPLHDAAKNGHVSIVELLLLHGASRDAVNIFGLR
PVDYAESEKMKSVLMLPVKNESLSLNQPSEVLSQPRDGPLGVLGSNLSSQQQKLLNNLAT
VLKAQRCTEFNSKVTHLVIPDAPMPRTVKCMMAVLTGCWVLKFEWVQACLRTSVREQEEK
YEIQGGPRRGRLNREQLLPNLFDGCYFYFLGSFKHHQKADLVDLVKAAGGQILLRQPKPD
SDVTQTINTVAYHAESASDQRFCTQYVIYDTSSKFKPEKVRQGKVWMAPSSWLIDCVMSF
QLLPVK
NT seq
2361 nt
NT seq
+upstream
nt +downstream
nt
atgcgggcggcgctccgcgggcgctcggggaacgcggtggccccgggcgggcagccccgc
tccgccgcccccatggagccgccctggggccgcacccgcgccgcgctggcccggctggag
acggcgctgagctgctcccgctgcgccggtgtcctgcggaagcccgtgtccctggggcag
tgcgagcacgtcttctgcctatcttgcgtgggtgactccgttggcaaagaatgcccagtg
tgccacatgccagcctgggtgcaagatgcgcagataaaccggcagctcgataacatgatt
cagctttgcagcaaactgcggcatctactgggtgtggacacctcggattcaacggaagat
acgtccacgccaactgtctcagactgtgaaaaaaagagtaagaaggaacagataaaaatg
tggttcagcccaagaagtaagaagattcgatgcatcctgaacaagagtcagcctgagact
aaaagcaatgacctttgtcaagacacgtcttccgtttatgattactttccttcccctcct
catgaaaagccctccgatccgataaaaaagccatcacagagacagaataagaagatgaag
aagaaacgtctggcagacattaacaaagtttggagcttagagaagcctgagcagaaagga
ggaggtgaggagaagactcccaaggaaaagtgtgtgaccatctgcagtcaaccagtagtc
ttctgcactcccgaaccagagagccctgaagagctgcttcagcaggaatccggaaaggaa
gctgactccagcaaaaacacagaacacgtgggaacgccaccacaggcaaaatcctcagag
aagaaagagaacagtgaggctgcatgccctgctcaagtcagcgaggagaaaaatcctgct
ccggagacatcgcagtcagtagaaaatgaaatcacacctctaaaacgcggaagggagcac
tccggacttccagttactcctcagtctaaaaggccaagaagaagcgagaggagcactgtt
gggaagggaggcaggcaagcagattgcttaaaggaatcagctcatggtcaccccatctcc
ccagtgtctgaacacaaaacaccaattcagagttcctcctccgtgtcaaaagtcaccaac
actgtcatgaggacaagaagctctgcagtcattcaagcagtaaacagcccttcgctttca
aaacctccctctaccccatcaacttccaagacttgtaatcaagtaggaataccacacagt
ccttctgtgttgaagtcccctggtggtaacacaattgccagaagaaattacaaaggagaa
actttgctccatgttgcttccatcaagggcgacttggcagcggttgaagagctcctgaaa
aacggggcagatcccaatgtcaaagataacgctgggtggacaccactgcacgaggcgtgt
aatcacgggcacaaagaagtggtggagctgttgctgcaacacaaggcgttagtgaacacg
acggggtatcagaacgactctccgcttcatgacgctgccaagaacgggcacgtgagcatt
gttgagctgctgcttttgcacggtgcctcccgcgatgcggttaatatatttggtctgcgg
cctgtggactatgcagaaagtgaaaagatgaagtctgtgctaatgttaccagtgaagaat
gaatcattatcacttaaccaaccctctgaggtgctgagccagccaagagacggacctctt
ggtgtactggggagcaaccttagttcccagcagcagaaactgctgaacaatctcgccacg
gttctgaaggctcaacggtgcactgaatttaacagcaaagtaactcatcttgttatccct
gatgctccgatgccaagaaccgtcaaatgtatgatggccgttctaactggatgttgggtc
ctcaagtttgaatgggtacaagcctgtctacggacctctgtacgtgaacaagaggagaag
tatgaaatccaaggtggcccgcgacgaggccggctcaacagagaacagctgctgcccaac
ttatttgacggatgctacttctactttttgggatctttcaagcatcaccagaaggctgat
ctcgtggacttggtcaaagcagcaggaggacagattctgcttaggcaaccaaaaccagac
agcgatgtgacgcagaccatcaacacggtggcttaccacgccgaatctgcttccgaccag
aggttttgcactcagtatgtaatctacgacacgtcttctaaattcaaaccggagaaggtt
cgtcaaggcaaagtttggatggctccctccagctggctgatagactgtgtgatgtcgttt
cagctcctgccggtaaagtga
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