Cuculus canorus (common cuckoo): 104067636
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Entry
104067636 CDS
T08597
Symbol
CNOT10
Name
(RefSeq) CCR4-NOT transcription complex subunit 10 isoform X1
KO
K12607
CCR4-NOT transcription complex subunit 10
Organism
cuca
Cuculus canorus (common cuckoo)
Pathway
cuca03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cuca00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
104067636 (CNOT10)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cuca03019
]
104067636 (CNOT10)
Messenger RNA biogenesis [BR:
cuca03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
104067636 (CNOT10)
BRITE hierarchy
SSDB
Ortholog
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Gene cluster
GFIT
Motif
Pfam:
TPR_1
TPR_2
ARM_TT21_N
TPR_12
TPR_8
ARM_TT21
TPR_17
TPR_7
DUF6058
TPR_MalT
Motif
Other DBs
NCBI-GeneID:
104067636
NCBI-ProteinID:
XP_053915287
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Position
2:118081517..118114520
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AA seq
744 aa
AA seq
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MAADKAADQNSEKHEGAGTSGITDQEKELSSNALQAFLAGNYDACLQHLNTLQDINKDDY
KITLNTAVAEFCKSNQTTTDNLRQTLNQLKNQVHSAVEEMDGLDDVENSMLYYNQAVILY
HLRQYTEAISVGEKLYQFIEPFEEKFAQAVCFLLVDLYLLTYQAEKALHLLAVLEKMISQ
GNNNSKNGKNDSGNNTNKDSSNQKAESGALIEVAKSKIHQYKVRAYIQMKSLKACKREIK
SVMNTAGNSAPSLFLKSNFEYLRGNYRKAVKLLNSANIAEHPGFMKTGECLRCMFWNNLG
CIHFAMGKHNLGIFYFKKALQENDNACAQLGTGSSDPGKKFSGRPMCTLLTNKRYELLYN
CGIQLLHIGRPLAAFECLIEAVQVYHSNPRLWLRIAECCIAANKGTSEQETKGLPSKKGI
VQSIVGQGYHRKIVLASQSIQNVVYNDGQSSAIPVASMEFAAICLRNALLLLPEDQQEPK
QENGSKTSNQLGGNAENSESSEACSNKSHEGDKFIAAPPSSPLKKQELENLRCSILACSA
YVALALGDNLMALNHADKLLQQPKLSGSLKFLGHLYAAEALISLDRISDAITHLNPENVT
DVSLGISSNEQDQGSDKGENEAMESSGKQTPQCYPSSVTSARTMMLFNLGSAYCLRSEYD
KARKCLHQAASLIHPKEIPPEAILLAVYLELQNGNTQLALQIIKRNQLLPSVKTLSDMRK
KPVFQPVHSIQPIQMPAFTTVQRK
NT seq
2235 nt
NT seq
+upstream
nt +downstream
nt
atggcggcggacaaggctgcggatcaaaattctgagaaacatgaaggagcaggtacttct
gggattactgatcaggaaaaggaattgtcaagcaatgcattacaagcttttctggctgga
aactatgatgcttgtttacaacacctcaatactcttcaagacataaacaaagatgactac
aaaattactttgaatactgctgttgcagagttctgtaagagtaaccagactacaacagac
aatttgagacaaaccctcaaccagctgaagaaccaggttcactctgctgttgaagaaatg
gatggtttagatgatgttgaaaatagtatgctgtactacaatcaagctgttattttgtat
catctgcgtcagtacactgaagctatatcagttggggagaagctgtaccagtttatagag
ccttttgaagagaagtttgcccaggctgtatgcttcttgcttgtagacttatacctgctg
acttaccaagctgagaaagccttgcatctgcttgctgttctggaaaagatgatttcacag
ggcaacaataacagcaagaatgggaaaaatgattcgggtaataatacaaataaagattct
tcaaatcaaaaagctgaaagcggggctttaatagaagttgctaaatcaaagatacatcag
tataaggtgagagcctatatccagatgaagtcactaaaggcctgcaaaagggagatcaag
tctgttatgaatacagctgggaattcagctccttctctctttcttaaaagcaattttgaa
tatttgaggggcaattatcgtaaggcggtgaaacttctaaacagtgcaaacattgctgaa
catccaggcttcatgaaaacaggtgaatgcctaaggtgtatgttctggaacaatcttggc
tgcatccactttgcaatgggaaagcacaatttaggaatcttttactttaaaaaagccttg
caagaaaatgataatgcatgtgcacagctaggaacgggcagctcagatccaggtaaaaaa
ttttcagggagacccatgtgtacactactgactaacaaacggtatgagttgctctacaac
tgtggtattcagctcttgcacattgggaggcccttagctgcctttgaatgcctgattgag
gcagtccaggtttatcactcaaaccctcgtctttggctgagaatagcggaatgctgtatt
gctgccaacaaagggacatcagaacaagagaccaaaggtcttcccagcaaaaagggaatt
gtgcaatctatagtaggtcaaggctatcaccgtaagatagtccttgcatctcagtccata
cagaatgttgtttataatgatgggcagtcctctgctatacctgtagccagtatggaattt
gcagcgatttgcttaagaaatgctttgctgctactgccagaagatcagcaggagccaaag
caggaaaatggatctaaaactagtaatcagctgggaggaaatgcagaaaacagtgaaagc
agtgaagcatgcagcaataaaagtcatgaaggggataaattcattgcagctccaccttct
tcacctttgaagaaacaggaattagaaaatttaaggtgctcaatacttgcatgtagcgca
tacgtggctctggctttgggtgataaccttatggcattgaatcacgcagataaacttctt
cagcagccaaagctgtcagggtctcttaagtttcttggccatttgtatgcagcagaagct
ctcatctctctagacagaatatctgatgccatcactcacttgaaccctgagaacgtcact
gatgtttcccttgggatctcttcaaatgagcaggatcaagggtctgacaaaggagagaat
gaggcaatggaatcttctggcaagcagacaccacagtgttaccccagttcggtcacatct
gcgcgaacaatgatgttatttaaccttggaagtgcttactgtttaaggagtgaatatgac
aaagctcgaaagtgtcttcatcaggctgcctcactgatccaccccaaagagatccctcca
gaggctattctgctggctgtatatcttgaattacagaatggcaacacccagctggccctg
cagatcatcaagagaaaccagcttctcccctctgtgaaaacactctccgacatgcggaag
aagcctgtttttcagccagtccattcaatccagcccattcagatgccagctttcaccact
gttcaaaggaaatga
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