Cuculus canorus (common cuckoo): 104067921
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Entry
104067921 CDS
T08597
Symbol
ZSWIM8
Name
(RefSeq) zinc finger SWIM domain-containing protein 8 isoform X1
KO
K25207
zinc finger SWIM domain-containing protein 8
Organism
cuca
Cuculus canorus (common cuckoo)
Brite
KEGG Orthology (KO) [BR:
cuca00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
cuca04121
]
104067921 (ZSWIM8)
Ubiquitin system [BR:
cuca04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Cul2 complex
Target recognizing subunit
104067921 (ZSWIM8)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ZSWIM4-8_C
SWIM
Motif
Other DBs
NCBI-GeneID:
104067921
NCBI-ProteinID:
XP_009569028
LinkDB
All DBs
Position
7:21481989..21538375
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AA seq
1819 aa
AA seq
DB search
MELMFAEWEDGERFSFEDSDRFEEDSLCSFISEAESLCQNWRGWRKQSAGPNSPTVKMKD
GLVIPLVELSAKQVAFHIPFEVVEKVYPPVPEQLQLRIAFWSFPENEEDIRLYSCLANGS
ADEFQRGEQLFRVRAVKDPLQIGFHLSATVVPPQMVPPKGAYNVAVMFDRCRITSCSCTC
GAGAKWCAHVVALCLFRIHNASAVCLRAPVSESLSRLQRDQLQKFAQYLISELPQQILPT
AQRLLDELLSSQSTAINTVCGAPDPTAGPSASDQSTWYLDESTLSDNIKKTLHKFCGPSP
VVFSDVNSMYLSSTEPPAAAEWACLLRPLRGREPEGIWNLLSIVREMFKRRDSNAAPLLE
ILTDQCLNYEQITGWWYSVRTSASHSSASGHTGRSNGQSEVAAHACASMCDEMVVLWRLA
VLDPTISPQRRRDLCSQLRQWQLKVIDNVKRGQHKKSLEKLFQGFKPAVEACYFNWEEAY
PIPGITYSSTDKKNSFCWVKAIQQRSCRLQCAEAACETGRAHGQETCLQPGDRLRPSSQE
PAVRPKELTGKRKVVSETPQRVLRRLSAEGDKAVYKTAVGKAKLPVSKGLANKHSGKRRM
SSEDSSLEPDLAEMSLDDSSLALGAEASNTFSFTESPLSRSYRDAFEEDGGVYFSEGPEP
TVRSSSLAKKSPKDPVGEIGSGDDDLPSADENSSGVGLKSEEVGENGAVGGGDDGEEEDD
YQVYYLNPQEVAKEDDDKAEGGNEEEQDIFAGIKPLEQENRMEILFACAEALYAHGYSNE
ACRLTVELARDLLANPPDLKVEQPPTKGKKNKVSTSKQTWMATNTLSKAAFLLTVLSERL
EYHNLAFRIGMFALELQRPPASTKALEVKLAYQESEIAALLKKIPLGTNEMNTIRGRAEE
LREGTLCDYRPVLPLMLASFIFDVLCTPVVSPTGSRPPSRNWNNEMPGDEELGFEAAVAA
LGMKTTVSEAEHPLLCEGTRREKGDLALALMITYKDDQSKLKKILDKLLDRESQTHKPQT
LSSFYSSSKPTVANQKSPSKHAAQSAAAIQQLPGTTVTQQAAVSPAVQSSPENFVEKSTQ
ESSQRSPCEPAAEATILKQEGKVPSRLALGSRGGYNGRCWGSPVRQKKKHTGMASIDSSA
PETTSDSSPTLSRRPLRGGWASTSWGRGQDSDSISSSSSDSLGSSSSSGSRRASGGARAK
TVEVGRYKGRRLESHAPHVPNQPSEAAAHFYFELAKTVLIKAGGNSSTSIFTHPSSSGGH
QGPHRNLHLCAFEIGLYALGLHNFVSPNWLSRTYSSHVSWITGQAMEIGSAALNILVECW
DGHLTPPEVASLADRASRARDSNMVRAAAELALSCLPHAHALNPNEIQRALVQCKEQDDL
MLEKACMAVEEAAKGGGVYPEVLFEVAHQWYWLYEQTVGGTPAQREGATGCSASGARAAS
EAVRALADNRVTSEPTTVTVAAAVTAAATVMPVISVGSTMYPQHTMSGPAMAHTHTQGLH
PYTTLQTHIPCNPQYIGHTIQHMPRPAVFPVPGSAYPQGVHPAFIGAQYPYSVTTPSLAA
TAVSFPGVPVPSMTQIAVHPYHSEAGLSLSSNVAIGSVHAGSTFPAIQGASLTTLSSQPN
SLVTGGFPAEDEQHSQPVSPQGLHYLHSAYRVGMLALEMLGRRAHNDHPNNFSRSPPYTE
DVKWLLGLAAKLGVNYVHQFCVGAAKGVLSPFVLQEIIMEALQRLNPAHVHNHLRTPAFH
QLVQRCQQAYLQYIHHRLIHLTPADYDDFVNAIRSARSAFCLTPMGMMQFNDVLQNVKRS
KQTKELWQRVSLEMTTFSP
NT seq
5460 nt
NT seq
+upstream
nt +downstream
nt
atggaactcatgttcgcagagtgggaggacggggagaggttttcgtttgaagactcggac
cgctttgaggaagactctctttgttccttcatctccgaggccgagagcctttgccagaac
tggagaggatggaggaagcaatcggctggacccaattcccccactgtcaaaatgaaagat
gggctggtgatcccactggtggaactgtctgcaaaacaggttgcgtttcacattccattc
gaggtggtggagaaggtttatcctccagtacccgagcaactgcagcttcgaattgccttc
tggagcttcccagaaaatgaggaagatatcaggttgtactcgtgtttggcgaatggcagt
gcagatgagttccagcgaggggagcagctcttcagggtgcgggctgtcaaggacccgctc
cagataggtttccacctgagcgccactgtggtgcctccgcagatggtgccacccaagggt
gcatacaacgtggcggtgatgtttgatcggtgcaggatcacatcgtgcagctgtacctgt
ggagcgggggccaagtggtgtgctcacgtcgtggcgctctgcctcttccggatacacaat
gcatcagccgtgtgcttgcgagcgcctgtttctgagtccttgtctcggctccagagagac
caattacagaagtttgcgcagtacctgatcagtgaacttccacaacagattcttccaact
gctcagcgcttgctggatgagctcttatcttctcagtctactgccatcaacacagtgtgt
ggagccccagatcccactgctggaccctctgcctcagatcaaagcacctggtacttggat
gaatctactctgagtgacaacataaagaaaacccttcataagttctgtggaccctctcct
gttgtttttagtgatgtgaattcaatgtacctctcttccacggagccaccagctgctgct
gagtgggcctgtctcctgcgtcccctgcgaggaagggagcctgaggggatctggaacctg
ctctccattgtgcgggagatgtttaagagacgggacagcaatgcagctcctttactggag
attctgactgatcagtgtctcaactatgagcagataaccggctggtggtacagtgtgcgg
acttctgcctcgcacagcagtgccagcgggcacacgggacgcagcaatggccagtcggaa
gtcgcggctcacgcttgtgcaagcatgtgtgatgagatggtggttctctggaggctggcg
gtccttgacccaactatcagtccacagaggcgcagggacctttgctcacagctcagacag
tggcagctcaaagtcatagataacgttaagaggggtcagcacaagaaatccctggagaag
ctcttccagggtttcaagccagctgtggaagcctgttacttcaactgggaggaagcttat
cccattccggggatcacctatagcagcactgacaagaagaactcattctgttgggttaag
gccatccagcagaggagctgccggttgcaatgtgcggaagctgcctgtgagactggtaga
gcccatggacaggagacgtgtctgcagcctggggacaggctgcgtccctcttcccaggag
ccagcagttcggccgaaggaacttactggaaagcgtaaagttgtctctgaaacaccacag
agggttctgagacggctttcagcagaaggtgacaaagctgtgtataagactgcagtgggc
aaagcgaagttgccagtgagcaaaggcttggccaataaacacagtgggaaacgccgcatg
agcagtgaagacagctctctggagccggacttggcagagatgagcctggatgacagcagt
ctggctctgggggcggaagccagcaacacctttagttttactgaaagcccgctgagtagg
agctacagggacgcctttgaggaggatggtggggtgtacttctctgagggacctgagccc
actgtcaggagcagttccttggccaagaaatcgcccaaggatccagtgggggaaataggt
agtggcgatgacgacctaccctctgcagatgagaacagcagtggtgtgggcctgaagtca
gaagaagtaggggagaatggtgccgtggggggaggggacgatggggaagaggaagatgat
taccaggtgtactatctgaacccacaagaggtagccaaggaagatgatgacaaagctgaa
ggggggaatgaagaggaacaggatatatttgctggtataaagcctctggagcaggagaac
cggatggagatcctatttgcctgtgcagaggccctgtacgcacatggatacagtaatgaa
gcgtgccgattaactgtagagcttgctagggacttgctggccaacccaccagatctcaaa
gtggagcagccaccaactaagggcaaaaagaacaaggtatcaacgagcaagcagacgtgg
atggcaaccaacaccttgtctaaagctgcttttctgctgactgtgctgagtgagcggttg
gagtaccacaacctggctttccgaataggaatgtttgctctggagctgcagagaccacct
gcttctacaaaggctctggaggtgaagctggcatatcaggagtctgagatcgcagccctc
ctgaagaagattcccttgggcactaatgagatgaataccattcgaggaagagctgaagag
ctacgagaagggacattgtgtgactaccgtcctgtcctgcctctgatgttggcaagcttt
atatttgatgtcctgtgcactccagtggtttctcctacaggctccaggcccccaagccgt
aattggaataacgaaatgcctggagatgaagagcttggttttgaggcagctgttgctgct
cttggcatgaaaacaactgtcagtgaagcggagcatcctctgctgtgtgaaggcacccga
agggagaagggggatctcgccctggccttgatgattacttacaaggacgatcagtctaag
ctgaagaagattttagacaaactcctggacagagagagtcaaactcacaaaccacagact
ctgagttccttctactcatccagcaagcctacagtagcaaatcagaaatctccttccaag
cacgctgcccagtccgcagcagcaatccagcagcttccagggactactgtcactcagcaa
gcggctgtaagccctgcagtccagagcagtcctgagaacttcgtggagaagagcacacag
gagagctctcagaggtccccctgcgaaccggctgcagaagccaccatcttgaaacaagag
ggaaaggtccccagtcgcctggcccttggaagccgaggtggatacaatgggagatgctgg
ggttcgcctgtcaggcaaaagaagaaacacacaggcatggctagtattgacagcagcgct
cccgaaaccacctcagacagttctccaacgctcagtcggcgtccgctgcgtgggggatgg
gcatcaacgtcctggggcagaggacaggacagtgacagcatcagcagctcctcaagtgat
tcattgggatcttcctcttccagtggcagcaggagagccagtgggggagcccgtgcaaag
accgtggaggttggcaggtataaagggaggcgcctggagagccatgctcctcatgtccca
aaccagccctcagaggcagctgctcacttctactttgaattggccaagacagtccttatc
aaagcaggtggaaacagcagtacctccatcttcacccacccttcctccagtggtgggcac
cagggaccacaccgcaacctccacctctgcgccttcgagattgggctgtatgcactaggg
ctgcacaactttgtgtctcccaactggctctctcgaacgtactcctcccatgtctcttgg
atcacagggcaggccatggagattggtagtgcagccttgaacatcttggtggagtgttgg
gacggacatctgactcccccggaggtggcatcattggcagacagagcttcacgggccagg
gactccaacatggtgcgggcagctgctgaactggcactcagctgcctgccccatgcccac
gccctgaaccccaatgagatccagagagctctggttcagtgtaaggagcaggacgatctg
atgctggaaaaggcctgtatggcagtggaagaagcagctaaaggtggtggtgtgtaccca
gaagtcctcttcgaagtagcgcaccagtggtactggctgtacgaacagactgttggtggg
accccagcccagagagaaggtgccactggctgcagtgccagtggtgcacgggctgcctcc
gaagcagtgcgtgcattggcagacaaccgtgtgacttctgagccgaccactgtcacagtg
gcagctgcggtaactgccgcagcaacagtcatgccagtgatctctgtagggtcaaccatg
tacccacagcacacgatgtcagggccggcaatggctcacacacacacgcagggcctgcac
ccatacaccacgctgcagactcacatcccctgcaacccccaatatattggacacactatc
cagcacatgccacgcccagctgtcttcccggtgcctggctcagcgtacccacagggtgtc
catccagcattcataggagcgcagtacccttactcggtaacaacaccgtcactggcagct
acagccgtgtcgttccctggtgtgccagtcccatccatgacgcagattgcggtgcatccc
tatcacagtgaggcaggactgtcactgtcttccaatgtagcgataggaagtgtccatgca
ggatcaacgttcccagcgattcagggggcttccttgacaactctgtcctcacagcccaac
tcccttgttacagggggttttcctgccgaggatgagcagcacagtcagcctgtgagcccc
cagggtctgcactacctccactccgcataccgagttgggatgctggctctggagatgctt
ggccgaagagctcacaacgaccatcccaacaacttctcccgcagcccaccctacacggag
gatgtaaaatggctccttgggttagctgcgaagttaggtgtaaactacgtgcatcagttt
tgtgtcggtgcagccaagggggtgctgagcccttttgtgctccaggagatcatcatggaa
gctctgcagaggctcaaccctgcccatgtgcacaaccacctgcgcaccccagccttccac
cagctggtgcagcggtgccagcaggcctacctgcagtacatccatcatcgtctgatccat
ctaactcctgctgactacgatgactttgtgaatgccatccgcagcgccagaagcgccttc
tgcctgactcccatgggcatgatgcagtttaatgatgttctccagaacgtaaagcgcagc
aagcagacaaaggagctgtggcaaagggtgtctctggaaatgaccaccttctcaccgtga
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integrated database retrieval system
