Cuculus canorus (common cuckoo): 104068069
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Entry
104068069 CDS
T08597
Symbol
TRPA1
Name
(RefSeq) transient receptor potential cation channel subfamily A member 1
KO
K04984
transient receptor potential cation channel subfamily A member 1
Organism
cuca
Cuculus canorus (common cuckoo)
Brite
KEGG Orthology (KO) [BR:
cuca00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
cuca04040
]
104068069 (TRPA1)
Ion channels [BR:
cuca04040
]
Voltage-gated cation channels
Transient receptor potential channel (TRP)
104068069 (TRPA1)
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Gene cluster
GFIT
Motif
Pfam:
Ank_2
Ank
Ank_3
Ank_4
Ank_5
Ion_trans
PKD_channel
DUF5685
Motif
Other DBs
NCBI-GeneID:
104068069
NCBI-ProteinID:
XP_053915042
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Position
2:34847589..34916058
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AA seq
1126 aa
AA seq
DB search
MKRSLLRFCHSREKAAASSSYQGVVCEADAASVASQDVFKVISDGSACRLRSFIKKNRFG
LTKVDELNATPLHHAAEGGQIELMQLIIDDSSCEVLNVMDSSGNTPLHWATKKNQVESVS
LLLSRGANPNILNSNMMAPLHMAVQSLHNEIVKILVQHSSTDVNLEGEAGNTPIMVACYK
DNPEALTLLIENGGKICKPNKTGCMPIHAAAFSGAKTCMEILLKKGEELGHSAKTHINFT
NNGKCSPLHLAVQSGDLEMIKMCIEFGAQIDLKQNEKCTALHFAATQGATEIVKLMISSY
AGEESIIDAVDGNKETLLHRTALFDHYELAEYLISMGANIDSVDIEGRSPLLLATSCASW
KIVNLLLSKGANVSLKDHLGRNFLHLTVLQPGGLQHLNEKFLQMEHIKNLVVDEDNEGCT
PLHYACRQGVALSVNNLLSLNVSIYSKSRDKKSPLHFAASYGRINTCQRLIRDMKDTRLL
NEGDKKGMTPLHLAAQNGHEKVVQFLLKRGALFLCDYKGWTALHHAAFGGYTRTMQIILD
TNVKCTDRVDEEGNTALHLAAREGHAKAVRLLLDYGAKILFNKAVASFFHEAIHNRRKDV
VSAVILHKRWEEAVMTFSHYSTANKCPLLEMVEYLPDSFKLVLDNCIIESSEEKTSRDFY
IEYNFRYLQCPLTLNKKLKEGEDIFYEPLTTLNAMVRHNRMELLSHPVCKEYLLMKWMAY
GFRAHLMNLGIYSLGLIPLTLLVTHIQPGKPFNGTEMYEARPLEYENSYFTRVCMCLVLI
MSLLGICKEIFQLIQQKLKYLLDYSNLLDWTIYTTSIIFVSSLFINTPAHLQWECGAIAV
YLSWMNFLLYLQRFENYGIYVVMFWEILRTLIRIAVVFFFLILAFGLSFFVLLGSQQTYS
TPLLSVMKTFAMMLGDINYHDAFLDPLLSSELPYPFLSYTVLIIFTLLIPILLMNLLIGL
AVGDIAEVQKYAALKRIAMQVNLHTNLEKKLPFWFLSRVDQESITVYPNRPRYCGFMSVF
QYCFGCEDSTTDAQSTDTTLELEVLKQKYRLKDISTLLEKQHDLIKLIIQKMEIVSEAED
EDSNDLFQHKFRKRQLEHKNSKWDTVLKAVKTNVSNPSTEKNNSFF
NT seq
3381 nt
NT seq
+upstream
nt +downstream
nt
atgaagcgctcgctgctgcggttctgccactcgcgggagaaggcggccgcctccagctcc
taccaaggcgtcgtctgcgaggcggacgccgcctccgtcgcctcgcaggatgtgttcaag
gtaatttcagatggaagtgcctgtaggctacggagcttcattaagaagaatcgttttggg
cttaccaaagtggatgaattaaacgccaccccactgcatcatgctgcagaaggaggtcaa
atagaattaatgcagttgatcatagatgattcttcctgtgaagtattaaatgtaatggat
tcttctggaaataccccgctgcactgggccacaaagaaaaaccaggttgaaagtgttagt
ttgcttctcagcagaggagccaatccaaacattctgaactccaatatgatggcacctttg
catatggctgtgcagtccctacataatgaaattgttaagattttagtccagcatagcagt
acggacgttaatttggaaggtgaagcagggaacacacctataatggtagcatgttacaag
gataatcctgaagcactgacactcctgattgaaaatggaggaaaaatatgtaaaccaaac
aaaacgggatgtatgcctatccatgcagctgcattttcaggtgcaaaaacttgtatggag
attcttttaaaaaaaggtgaagaattgggtcactctgctaaaacccacatcaattttacc
aataatggaaaatgcagtccacttcatttggcggttcaaagtggggaccttgaaatgatt
aaaatgtgcattgaatttggagcccaaattgatctgaaacagaatgaaaaatgcacagca
cttcattttgctgccactcaaggagcaactgagattgtaaagttaatgatttcatcctat
gctggtgaggaatcaataattgatgctgtagatggaaataaagaaacattgcttcacagg
acagcattgtttgatcattatgaactggcagagtatttgatttcaatgggggctaatatt
gatagtgttgacatagaaggtcgatccccgcttctgttggccacttcctgtgcatcatgg
aaaattgtgaatttactgctttcaaaaggagcaaatgtatcattaaaagatcatcttggt
cggaatttcttgcatttgacggtattgcagcctggaggattacagcatctgaatgagaaa
tttctgcagatggaacatattaaaaaccttgtagtggatgaagataatgaaggatgtact
ccgttgcattatgcatgcagacaaggtgtggccctctctgtaaataatttactcagcctc
aatgtttcaatctactctaagagcagggacaagaagtctccattacactttgctgccagc
tatgggcgcatcaatacatgtcaacgacttataagagatatgaaagacacaaggcttttg
aatgaaggtgataagaagggaatgactccccttcatttggcagcccagaatggtcatgag
aaagtagttcagtttcttctgaaaagaggggccctttttctctgtgattataaaggctgg
acagccctgcaccatgctgccttcggaggatacactcgtacaatgcagatcattttggat
actaatgtgaagtgtactgacagagtggatgaagaagggaacacagctttgcacctggct
gcaagagaaggacatgcaaaagcagtaaggttacttcttgactatggtgcgaaaatcctg
ttcaacaaagcagtagcttcttttttccatgaagcaatacacaatcggaggaaagatgta
gtgtctgctgtcattttacacaaaagatgggaagaagctgttatgacattctctcactat
tctactgccaataagtgtcctttgctggaaatggttgagtatcttcctgattcgtttaag
ctggttttggacaactgtataattgagtcttcggaggaaaaaacaagtcgagacttctat
attgaatataacttcagatatcttcagtgtcccctgacacttaacaagaaattaaaggag
ggtgaagacattttctatgaaccactcaccactttgaatgccatggtacgccacaatcgc
atggagctactcagtcatcccgtgtgtaaagaatatctgcttatgaaatggatggcctat
gggtttcgcgcacacctaatgaacttaggcatatattctcttggtctcatcccactgact
cttctggtcactcacatacagccaggaaaacctttcaatggaacagaaatgtatgaagca
agaccattagaatatgagaactcatacttcacaagagtgtgtatgtgtttagttttaatt
atgagtttactgggaatctgcaaagaaatatttcagctcattcagcagaaattgaaatat
ttgttggattactccaatctactggactggaccatttatactacaagcataatttttgtg
tcttctctatttattaatacaccagctcatttgcagtgggagtgtggagcaattgctgta
tacttgtcttggatgaacttcttgctttaccttcaacgatttgaaaactatggcatctat
gttgtgatgttctgggaaattttgaggactttgattcggattgctgtcgttttctttttc
ctgatattggcctttggactgagtttctttgtccttttggggtcacagcaaacgtatagc
acacctctgctttctgtaatgaagacatttgcaatgatgctgggagacattaattaccat
gatgcattccttgatccattactaagcagtgaattgccatatccattcctgagttacaca
gttcttattatatttaccttgctcattccaatccttcttatgaacttgctaattggtttg
gctgttggggacatagctgaagtacaaaaatatgctgcactcaaaaggatcgccatgcag
gttaatcttcacaccaacttagagaagaagctaccattttggttcttgagtcgagtggac
caggaatcgatcactgtatatcccaacaggccgagatactgtggatttatgagtgtgttc
cagtattgctttgggtgtgaagactctaccacagatgcacagagcactgatacaacgtta
gaactggaagttctgaagcagaaatacaggctcaaagatatatcaacactgttggaaaag
caacatgacctcattaaattgattatacaaaaaatggagatagtgtcagaggctgaggat
gaagacagcaatgatttatttcagcacaagtttaggaaaaggcagttagagcacaagaat
agtaaatgggatacagtgttaaaagctgttaaaacaaatgtgtctaacccaagcacagaa
aagaacaatagcttcttctag
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