Cuculus canorus (common cuckoo): 104068133
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Entry
104068133 CDS
T08597
Symbol
SLX4
Name
(RefSeq) structure-specific endonuclease subunit SLX4
KO
K10484
structure-specific endonuclease subunit SLX4 (BTB/POZ domain-containing protein 12)
Organism
cuca
Cuculus canorus (common cuckoo)
Pathway
cuca03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
cuca00001
]
09120 Genetic Information Processing
09124 Replication and repair
03460 Fanconi anemia pathway
104068133 (SLX4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
cuca04121
]
104068133 (SLX4)
03400 DNA repair and recombination proteins [BR:
cuca03400
]
104068133 (SLX4)
Ubiquitin system [BR:
cuca04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Cul3 complex
Adoptor and target recognizing subunit (BTB)
104068133 (SLX4)
DNA repair and recombination proteins [BR:
cuca03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Other HR factors
104068133 (SLX4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Slx4
BTB
zf-C2H2_jaz
B129_C2H2-zf
Zn-C2H2_12
zf-C2H2_6
Motif
Other DBs
NCBI-GeneID:
104068133
NCBI-ProteinID:
XP_053936705
LinkDB
All DBs
Position
15:1234388..1267805
Genome browser
AA seq
1849 aa
AA seq
DB search
MPMDEQDNDFKELWANLLGGAKKKAGDSEAAKRAKNRSKSTAARGRSRTGKGAAKGKTHH
LPAVKKANLLQDLGPKEQISLHKENSDAAVCSSSETAPGDGKRSPFPASQLSAVSSECSQ
RTLTVNPLSSCSQTTLSFHPATQPGTCSSPTSKAPKVRVAELVVERMQQFKRVAPEQLKH
SMDDNLPKSDESQEQNPPENDAHHLLSMEHDGALALALQQESKEDGLASLEDAGLFFCQI
CQKDLSAMNTTRREQHVNRCLDEMEEAQMSSSSKPPVPECPICGKQFQTAQSRVSHLKRC
AVEMDIPPNLLLQAVHLQASSLGEAPLQCPNHQPSRAKRKGSSKEDSKKMQKRAKLETKD
EDLLVAMAMSRSLLEQEKQEQAKSFTNVKPVAALPIKWKPGSEKKRRKRGPTAPPPLLLQ
DPEKARKRIQERVAMLLAEEVEFPPTPQLPASRILEDESGKATWLLPLSKNRECYLWNIS
ALTGPYDPESFYTAALTPPIVPWKPVQNHQPENLLPSVGSDQPEASQQIEPDLSSHKPAC
SEAGGQTSDESKPGHEDGQFLSRSQMDVQTLQDLVELAKEGLTLTQWNLDVDRIQAAEQP
EPTSSDIPQSGFVPPSKEKSLLTSSCKRSSLRSLAEDFSAMVNNPHLSDVQFQVDSGEVL
YAHMFVLYARCPQIVEVVHSQGFLVEEDGNPQTRRVLLSDVTGEAVSAFLRYLYAADADI
PAGLRPQVGDLAARFGVRELKCESCTGESQVSSGVDSDDDLLSVRDDKDCEDRAENFQDL
LKSVWVGEDEEEVSMLSPEYQKEDDNGMGEQELEEIYEFAATQRKMVQGEREESEGTDCS
MCSDTEAAQGTNQQTEEEEVKRSESASISDSFKDLKDNNDVERSKCDFSAQEKMQNINRC
ENMHAPQTAFVPHHNKPQKWDTAPHGATTNEGETIRRCEGVKDSKSSQVLPEGAEPCEEQ
FPGLHSDPDTNDSYKYLFSATQRGYCEPSPMNDVTRESGKAPSEKHVDVNDPLLYSMSQR
ELSPCRNGFCGSPFPKPHVPHFPALGSSPASPKADRKFAREHISTPKQNKKSSPPDEKPF
QRPSELDTASRNENTVSPAELPNTDVKKCAYVSVLSSPVIRTRGAAAQGNKDGDIIVLSS
DDEMELHQETKSPESSSALKEMEIPGPAECMNAEQGPEIPTPEPNSSVTEAEQGSAQASG
GVTDTVHVVNDVEMSTELPLSSAHMGSKRSPNLSPEKRLGHEVSSGTDNSWLVPDTPVLS
KSRSFSTQTRVTSINSLKSSGSKLSPKNLTAGNIDHEMSENLIKVCETTLVGKHLPVENS
DTGRSLPSSPAAGSAPKNSPPVSPANPVLLSPDYTNIKSRCATNSSLSKPASPCPEQSLA
DKTNTSVIEVEDSEKEISLPSVSSSVVLCDEPPIAVDDYWHVECLSPVRGGNQDSCQGSR
AKSSTTSSPSMGSWHDQSPRHTQEMKGSTPLRGSPVGRRTALLCLDKSPIEACSSVGSRP
SYLNSKIWDDWNGDEEEDEFPEMLPLSQRVPAAAGASQTDPAKTPEPSCQENNEPPSTPG
TPMPAYSIMETPELKKELRRFGVRALPKRQMVLMLKEIFQYTHRDVDSDFEDEFPASQRP
LQKSLAECSRQPKADQGARGKRSSRAGGKRKKVAAASSGLPAERADDALVGSQESGCAAP
KEGTRITEDPERAKEQKRPSVSPERWSLVDDGEEQELSASQESAVSSLDGSDISFGSQSF
MNGFEACDFASEEEEEEIPASQAAAREEDKQEAIRCYIRSNTALYNRILFYEPLELAELH
AELKQNGIKISQAKLLDFLDAHCITFTTARARKEREQKRKGNKKRRKRY
NT seq
5550 nt
NT seq
+upstream
nt +downstream
nt
atgccaatggatgaacaggacaatgattttaaagagttgtgggcgaatcttttgggtgga
gcaaagaaaaaagctggagacagtgaggcagcgaagagggctaagaacaggtcgaagagc
actgcagcaagaggcagatctagaacaggcaaaggtgctgctaaaggcaaaacccatcac
ttaccagcagtgaagaaggcaaacttgctgcaagatttgggtccaaaggaacaaatatct
ttgcacaaagaaaatagtgatgctgcggtgtgtagcagtagtgagactgcaccaggggat
ggaaagagaagccctttccctgccagccagctgagtgcagtgtccagcgagtgcagccag
aggactctgacagtaaatcctctgagtagttgttcccaaactacattatccttccatcct
gctacgcagccagggacctgctcttcacccacctcaaaggcaccaaaagtgcgggtggca
gagctggtggtggagaggatgcagcagttcaagagggtggcacccgagcagctaaagcac
agcatggatgacaacctgccaaagtctgatgaaagccaggagcaaaacccaccagagaat
gatgcccaccatcttctgtccatggaacacgatggggctctggccttggctcttcagcag
gaaagcaaagaggacggcctggcaagcctggaggatgcaggcttgtttttttgtcagatc
tgccagaaagatctctcagccatgaacacaacgcgacgagagcagcacgttaacaggtgc
ctggatgagatggaagaagcacagatgtcatcctccagcaagccaccggtcccagaatgt
cccatctgcgggaagcagttccaaaccgcccagagccgagtcagtcacttgaaacggtgt
gctgtcgagatggatattcctcctaacctgcttcttcaggcagtgcacttgcaggcgtcc
tcgcttggggaggcacctcttcagtgtcccaaccatcaaccaagcagggcaaagcgaaaa
ggctcctccaaagaggactcaaagaaaatgcagaagagggccaaattggagactaaggat
gaagatttgctggttgctatggcaatgtcacgctctctgttggagcaagaaaagcaggag
caagcaaaatcctttacaaatgtgaaaccagtggctgctttgccaatcaaatggaagcca
ggatcagagaaaaaacggcgtaaaagaggcccaactgcacctccaccattactgcttcag
gacccggagaaggcccgcaaaaggatccaagagcgagtagctatgctgcttgcagaagag
gtggaattccctcctacccctcagcttcctgctagtaggattttggaggatgaatctgga
aaagcaacctggctgttgccattgtccaaaaacagagagtgctatttatggaatatcagt
gctctgacaggaccctatgaccctgagtcgttctacactgctgcattaacccctccaatt
gtaccctggaagcctgtgcagaatcatcagccagagaaccttctgccatcagtgggatct
gatcagccagaagcgtcccagcaaattgagcctgacctcagttctcataagcccgcttgc
tcagaggctggaggccagacttccgatgaatccaaaccaggccatgaagatggacagttt
ttatctcgcagccagatggatgttcagaccctccaggacctggttgagttggccaaggaa
ggacttaccctcactcagtggaaccttgatgtggaccgcattcaggcagcggagcagcca
gaaccaacttccagtgatattccacagagtggctttgtccccccatccaaagagaagagc
ctcctgacaagcagctgtaaaagatcctctctcaggtcgctggctgaagatttcagtgcg
atggtcaacaacccccacttaagtgatgtccaattccaggtggactctggggaagtcctc
tacgcccacatgtttgtgttgtacgcccggtgcccgcagatcgttgaggttgttcacagc
caagggttcttggtggaggaggatgggaacccacagacgcgccgtgtgctgctgagtgat
gtgacaggagaggcagtgtctgcgttcctgcgatacctgtacgctgctgatgccgacatc
cctgctgggctgcggccccaggtcggggatctggctgccaggtttggtgtgagggaattg
aagtgtgaaagctgcactggagagagtcaggtgtcttctggagtggattcagatgatgat
cttctctctgtgagggatgataaggattgtgaggacagagctgagaacttccaagacctc
ttgaagtcagtgtgggtgggtgaagatgaggaagaagtatctatgctgagccctgaatac
cagaaggaagatgacaatgggatgggtgaacaggagctggaggagatctatgagtttgct
gcaactcagagaaagatggttcaaggtgaaagagaggagagtgagggaacagactgcagc
atgtgcagcgatacggaggcagcccaaggtacaaaccagcaaacggaggaggaggaagta
aagaggtctgaatctgcttcaataagcgacagcttcaaagatttgaaggataacaatgat
gtggaaaggtctaaatgtgacttttctgcccaagagaaaatgcagaatataaataggtgt
gaaaacatgcatgctccacagaccgcttttgtgcctcaccacaacaaacctcaaaaatgg
gacacagcaccccatggtgccaccactaatgaaggagagaccattaggagatgtgaaggc
gtgaaggattccaagtcatctcaggtcctacctgagggggcagagccctgcgaagaacag
tttcctggcctccatagtgatcctgatacaaatgacagttacaaatacttgttttctgcc
acacagcgaggttactgtgagccttccccaatgaatgacgttaccagagaatcaggaaag
gctcctagtgaaaaacacgttgatgttaatgatcctcttctgtacagcatgtcacaaaga
gagctctctccatgtaggaatgggttttgtggaagtccctttcccaaacctcatgtgccc
cattttccagctcttggctcttcacctgcatctccaaaagcagacagaaagtttgccaga
gaacacatatcaacaccaaagcaaaacaaaaagtcatccccacctgatgaaaaacccttt
cagagacccagtgagctggatactgcgtcaaggaatgagaacacagtttctccagcagag
cttcccaacactgacgtaaagaagtgtgcgtatgtctcagtgttgtcatcgcctgtcatc
agaactcgcggtgctgcagctcaggggaacaaggacggtgacattattgttttatcttct
gatgatgaaatggaattacatcaagagacaaagtcaccagagtcaagctctgctctgaaa
gaaatggaaatacctgggccagcggaatgtatgaacgcagaacaaggtcctgagatacca
acgcctgaacccaactcatcagtcactgaagcagagcagggatcagcccaggcctcgggt
ggtgttacagatacagtgcatgtagttaatgatgtagagatgtccaccgaattgcctctc
agcagtgcccatatggggagcaaacggagtccaaacctgagccctgaaaaaaggcttggt
cacgaagtgtcgtcaggtacagacaactcctggctggtgccagacacaccggttctgagc
aaaagcagaagcttctcaacacagactcgggtcacaagtattaattctttaaagagttca
ggatctaaactcagcccaaagaacttaacagcaggtaacattgaccatgagatgtctgag
aatctaataaaagtttgtgaaacaacattggtaggcaaacatttgcctgtggagaactca
gacactggaaggagcctgcccagcagcccagcagcaggatcagctcccaagaactcccca
ccggtttctccagcaaatccagttctcctctcccctgactataccaacataaaaagccga
tgtgccacaaactcatctttatccaaacctgcctcgccgtgccccgagcagtccctagca
gataaaacaaataccagtgtgattgaggtagaggacagtgaaaaggaaatcagcctgcct
tctgtgagcagtagcgttgtgctctgtgacgagcccccaatcgctgttgatgactactgg
catgttgagtgcctgtcaccggtcagaggaggcaaccaggactcctgccagggcagccgc
gcaaagagcagcaccaccagcagccccagtatgggctcctggcacgaccagagcccgagg
cacacgcaggagatgaagggcagtacccctcttcgaggaagtcccgttggcaggagaaca
gctttgctctgtcttgacaagagtcctattgaggcatgttcctcagtgggcagtaggccg
agttacctcaactccaaaatctgggatgactggaatggagacgaggaggaagatgaattt
ccagagatgcttcctctgtctcagagggtgccggctgcagcaggtgccagtcagacagat
cctgcgaagactcctgaaccttcctgccaggagaacaacgagcctcccagcacgccgggg
acaccgatgccagcttactccatcatggagacccccgagctgaagaaggagttgagaaga
ttcggagttcgtgctctccccaaacgccagatggtgttgatgctaaaggagatattccag
tatacacaccgggacgtggactctgactttgaggatgaattcccagcctcccagcgtccc
ctgcagaagtccctggccgaatgctctaggcagccaaaggcagaccagggtgccagagga
aagcgttcctcaagggctggtggcaagaggaagaaggtagctgcagcttcttcagggctc
cctgcggagagggcagacgatgcccttgttggatcccaggaatcaggctgtgcagcaccc
aaggagggaacgagaataacagaagacccagaaagagccaaagagcagaaaaggccatct
gtatctccagagagatggtctctggtagacgatggggaggagcaagagctctcagcgtct
caagagtctgcagtttcttcactggatggaagtgacatctcttttggttcgcagagtttt
atgaatggatttgaagcctgtgattttgcatccgaggaggaggaagaggagattccagca
tctcaggcagcagctcgggaagaagataagcaggaggcaatcaggtgctacatccgatca
aacacagccctgtacaacagaattctcttttatgagccactcgagctggctgagctgcat
gcagagctgaaacagaacggcattaaaatttcccaggcaaagctgctggactttttagat
gcacactgtattacatttaccacggccagggcccggaaggagagggaacagaaaagaaag
gggaacaaaaagaggaggaaaagatactga
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integrated database retrieval system
