Cuculus canorus (common cuckoo): 104068303
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Entry
104068303 CDS
T08597
Symbol
KATNB1
Name
(RefSeq) katanin p80 WD40 repeat-containing subunit B1 isoform X1
KO
K18643
katanin p80 WD40 repeat-containing subunit B1
Organism
cuca
Cuculus canorus (common cuckoo)
Brite
KEGG Orthology (KO) [BR:
cuca00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04812 Cytoskeleton proteins [BR:
cuca04812
]
104068303 (KATNB1)
Cytoskeleton proteins [BR:
cuca04812
]
Eukaryotic cytoskeleton proteins
Microtubules
Tubulin-binding proteins
Microtubule severing proteins
104068303 (KATNB1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
Katanin_con80
WD40_Prp19
WD40_WDHD1_1st
WD40_CDC20-Fz
Beta-prop_EML_2
WDR55
Beta-prop_WDR90_POC16_2nd
EIF3I
Beta-prop_TEP1_2nd
Beta-prop_CAF1B_HIR1
ANAPC4_WD40
Beta-prop_EML
WD40_MABP1-WDR62_2nd
Beta-prop_DCAF4
Beta-prop_SCAP
WD40_MABP1-WDR62_1st
Beta-prop_TEP1_C
Beta-prop_WDR75_1st
NBCH_WD40
Beta-prop_SPT8
Beta-prop_EIPR1
WDR90_beta-prop_4th
WD40_RFWD3
Beta-prop_IFT140_1st
Beta-prop_IFT122_1st
Beta-prop_Vps41
Beta-prop_RIG_2nd
Beta-prop_HPS5
eIF2A
RMC1_N
Beta-prop_WDR19_1st
PROPPIN
Beta-prop_RIG_1st
WDR54
VPS8_N
Beta-prop_IP5PC_F
Beta-prop_VPS8
Beta-prop_LRRK2
WD_LRWD1
Beta-prop_WDR11_1st
Motif
Other DBs
NCBI-GeneID:
104068303
NCBI-ProteinID:
XP_053935163
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All DBs
Position
13:complement(9547908..9567880)
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AA seq
660 aa
AA seq
DB search
MAGAVATKTAWKLQEIMAHSSNVSSLVLGKSSGRLLATGGDDCRVNIWSVNKSNCIMSLT
GHTKPIESLQINMNEELVVAGSQSGSIRIWDLEAAKILRTLLGHKANICSLDFHPYGNFV
ASGSLDTNIKLWDVRRKGCVFRYKGHTEAVRCLRFSPDGKWLASAADDHTVKLWDLAAGK
IMFEFTGHTGPVNVVEFHPNEYLLASGSSDRTVRFWDLEKFQVVSCIEEEATPVRCVLFN
PDGCCLYSGFQDSLRVYGWEPERCFDVVLVNWGKVADLSICNNQLIGVSFAQSTVSSFVV
DLSRVTKSGSIPHGLIRDDEPLVPPTPMGSSLRRIYDRPSTSCSKPQSRVKHNSESERRS
PSSEDDRDEKESKAEIQNQEDYKEIFQPKNAICRTPPRNEPFPAPPEDEPIAAKEAVKSS
QAVDVQISLPKQELVSASDPVQRPPIASSTPFTRTEPSVIPAARNEPIGLKASDFLPAVK
NQSQTELVDEEAMSQIRKGHETMCVVLTSRHKNLDTVRAVWSTSDIKNSVDSAVAINDLS
VVVDLLNIVNQKASLWKLDLCTIILPQIEKLLQSKYESYVQTGCTSLKLILQRFLPLITD
MLAAPPSVGVDISREERLHKCKLCYKQLKNISNIVKNKSGLSGRHGSAFRELHLLMAVLE
NT seq
1983 nt
NT seq
+upstream
nt +downstream
nt
atggccggcgccgtcgccaccaagacggcgtggaagctgcaagagatcatggctcacagc
agcaatgtatcctcactagtcctggggaaaagttcaggccggctgctggcaactggagga
gacgactgtcgggtcaacatatggtcagttaacaagtccaactgcatcatgagcttgaca
ggccatacaaagcccattgagagcctacagatcaacatgaatgaggaactcgttgttgca
gggtcccagtcagggtccattcgaatttgggacttggaagctgccaaaattcttcgtacc
ttactcggtcacaaagcgaatatctgcagccttgatttccatccttacggaaactttgtg
gcatctggctctttggacacaaacattaagctctgggatgtaagaagaaaaggctgtgtc
ttcaggtacaagggtcacacggaagcagttcgatgtctccgctttagtcctgatgggaaa
tggttagcctctgctgctgatgatcacactgtaaaactgtgggatctggctgctgggaag
ataatgtttgaatttacaggacatactggcccagtaaatgttgttgaattccatcccaat
gaataccttttggcttctggcagctctgacaggactgttcggttctgggacttggagaag
tttcaagttgtgagctgtattgaagaggaggctactcccgtcaggtgtgtgcttttcaac
ccagatggctgctgtttgtatagtggcttccaggattcactgcgtgtgtacggctgggag
ccagagcgctgttttgatgttgtcttggtgaactggggaaaagtagctgacttatctatc
tgcaacaaccagttgataggagtttcctttgcgcaaagcacagtctcttccttcgttgtg
gatctcagcagagtcacaaagtcgggttccatccctcatgggctgatcagggacgatgag
cctcttgtgccacctacccccatggggtcctcccttcgccgcatctatgacaggccgtcc
acaagctgtagcaagccacaaagcagagtgaagcacaactcagagagcgagaggcgaagt
cccagcagtgaagatgaccgggatgagaaggaatcaaaggctgagatccagaaccaggag
gattacaaagagattttccagcccaagaatgctatctgtcgaactcctcctcgaaacgaa
ccctttccagcccctcctgaggatgagcccatagctgcaaaggaagcagtgaagtccagc
caagctgtggatgtccagatctcattgccaaagcaagaacttgtcagtgcgtctgatccg
gttcagaggccaccaattgcctcctcaactcctttcaccagaacagagccgtcagtgatt
cctgcagccaggaacgagcccattggcttgaaggcttctgactttctaccagctgtgaaa
aaccaaagccagactgagcttgtggacgaggaagccatgtcccagatcaggaaaggccac
gagaccatgtgcgtggtgctcaccagccgccacaaaaatctggacaccgtgcgggctgta
tggagcaccagtgacatcaagaactctgtggactctgcagtggcgatcaatgatctgtct
gttgttgtggacctcttgaatattgtcaaccaaaaagcgtctctctggaagttggatttg
tgtactataatcctgccacagatagaaaaactactccaaagcaagtatgaaagttatgtg
cagactggctgcacctccctgaaactcattctccagagattcctgccactgatcacagac
atgctcgctgcaccaccttctgttggagtggacatctccagagaggaaaggctccataaa
tgcaagctgtgctacaagcagttgaaaaacatcagcaacattgtcaagaacaagtctggg
ctcagcggccgtcatggtagtgcctttcgggaactgcatctcctcatggctgtcctagag
tga
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