Cuculus canorus (common cuckoo): 104068315
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Entry
104068315 CDS
T08597
Symbol
EDC4
Name
(RefSeq) enhancer of mRNA-decapping protein 4
KO
K12616
enhancer of mRNA-decapping protein 4
Organism
cuca
Cuculus canorus (common cuckoo)
Pathway
cuca03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cuca00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
104068315 (EDC4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cuca03019
]
104068315 (EDC4)
Messenger RNA biogenesis [BR:
cuca03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
104068315 (EDC4)
mRNA degradation factors
5'-3' decay
Decapping complex
104068315 (EDC4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ge1_WD40
EDC4_C
WD40
WD40_WDHD1_1st
Beta-prop_EDC4L
Beta-prop_HPS5
WD40_CDC20-Fz
Beta-prop_TEP1_2nd
WD40_Prp19
NBCH_WD40
WDR55
Motif
Other DBs
NCBI-GeneID:
104068315
NCBI-ProteinID:
XP_053934928
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All DBs
Position
13:10058987..10094227
Genome browser
AA seq
1402 aa
AA seq
DB search
MASSSSIDIEDATQHLRDILKLDRPGGSVNENQRQSNSFNGDLNGLLVPDPIVAGDGPAL
AKPVHRSISLGALQEKQVICLSGDDSSTCIVISAKDVEIVASSDSSITSKARGSNKVKIQ
PVARYDWEQKYYYGNLIAVSNSYLAYAIRAASNGSAMVRVLSVSTAERTLLKGFTGSVAD
LAFAHLNSNQLACLDEAGNLFVWRLSMDKDKIQEEILINIKRPDNTPLNTSRRIVWCPFI
PDDNEESGEEGSQTLALLHEDRAEVWDLDIIRTNNSSWPVEVPSIKEGFIVVKGHSTCLS
EGALSPDGTVLATASHDGFVKFWQIYIEGQDEPRCLHEWKPHDGRPLSCLLFCDNHKKQD
PEVPFWRFLITGADQNRELKMWCTVSWTCLQTVRFSPDIFSSMSILPSLKVCLDLSAEYL
ILSDVQRKVLYVMELMQNQEEGKAYFSSISEFLLTHPVLSFGIQAVSRCRLRHTEVLPAE
EENDNLSVESAQGAGAVESAAGVLIKLFCVHTKALQDVQIRFQPLHSPDVSASMPSHASH
EEFVFPDHMADLSTEGLGSEKGSVHGSQPDLRRIADLPVPADFLSLSNDAKPKLMTPDAF
MTPSTSLQQIAISPGSSVSSLTAVTAMSSTSVTDASMPRPSEDLTVSPKMQLDTSLTLSS
SSSSLQTSPRSHAVLIPGLPDKLAPKAPVPVTPGNPSLALELQELEPLVVPQASPTRERS
PDVISSASTAMSQDIPEIASETLQRSFGAAPSGLSAEVLEPSHHVDSMASAASALHLLSP
RNRHNSEHSHHSLDMPPVEVDRLNAPSLLETALTQENASSDSVVSQPWPAAPDITRETRN
SMADSPRDEVEEKHKSSSYHRHSYHLLQHDSQDASAEQSDHDDEVASLASTSGGFGAKAS
TQRLPVKDWKAKASPRASPKLKRKGKKDDGDVNQSPRSSNNQVTPEFQDELMCILRNQQR
ELSELRQNQMELLQKLTNHLDAIQSSLMGHVERVIDSQQEQEQRRLDRALTEGQQRNGQL
QEHLSQQLSQSLSTAVCNRLERTIREEMKKTVPQCISKSMDPVAGQLSNTIATKLTAVEG
TLKENITKLVKSKNLTDTIVRATADTLQGPIQSAYREAFQSVVLPAFEKSCQSMFQQIND
TFKQGTQEYIQQLETHLKNKKVREQEARDPLLNQLRQLISAFQSTTEQLASTVAASVHAE
VQHQLHIIVGNMQESILAQVQRVIKGEVSLAMKEQQAAVTSSIVQAMRSAAGTPIPSAHL
DFQSQQTHILQLLQQGHLNQAFQQALTAADLNLVLYVCETVDTQQVFGQHPCPLSQPVLL
SLIQQLSSDLGTRTELKLNYLEEAVMHLDHSDPITRDHMGSVMNQVRQKLFQFLQVEPHN
TLSKPARRLMIMLQGLVTPGMT
NT seq
4209 nt
NT seq
+upstream
nt +downstream
nt
atggcctcctcctccagcatcgacatcgaggacgcgacccagcacctgcgggacatcctc
aagctggaccggccgggaggttcagtgaatgagaaccagagacagtcaaattcctttaac
ggtgacctgaatggactgctggtgcctgatcccatcgtggccggagatggacctgctttg
gctaagccagtgcatcgcagcatttctctgggagccctgcaggagaagcaagtcatctgc
ctttctggcgatgacagctctacctgcatagtgatatcagcaaaagatgtggagatagtg
gccagtagtgattccagcatcaccagtaaagccagagggagtaacaaggtgaaaatacag
cctgttgctagatacgactgggagcagaaatactattatggcaatcttatagctgtttca
aactcttacctggcttatgccattagagctgccagtaatggctccgctatggtgcgggtg
ttgagcgtcagcactgcagagcggaccttgctgaaaggattcacaggcagtgtggcagac
ctggcctttgctcatctcaactccaaccagctggcctgcctggatgaggctggcaacctt
tttgtctggcgactgtccatggataaagataaaatccaagaggagatcttgattaacatc
aagcgacctgacaacaccccgttgaacacctctcgaagaattgtctggtgtcctttcatc
ccagatgataatgaggagagcggtgaagagggaagtcagacactggcgttattgcacgag
gacagggcagaggtgtgggatttggacatcatccgaacaaacaacagctcctggccggtg
gaagtgcctagcatcaaagaaggcttcatcgtagtgaaaggccacagcacgtgcctgagc
gagggagcactttctccagatggaactgtgttggccacagcaagccatgatggctttgtc
aaattctggcagatctatattgaggggcaagatgagccaaggtgtcttcatgaatggaag
ccccatgatggaaggcctctttcctgcctgctcttctgtgataaccataaaaaacaagat
ccagaggttcccttctggagatttctcatcacaggagcagatcagaacagagaactgaag
atgtggtgcactgtttcttggacctgcctgcaaactgtccggttttctcctgatatcttc
agctccatgagtatccttcccagcctgaaagtttgcctggatctctccgctgaatatcta
atactgagcgatgtgcagagaaaagtcttgtatgtgatggagctgatgcagaaccaagaa
gagggcaaagcttacttcagctccatctctgagttcctccttacccacccggtcctaagc
tttggcatccaggcagtgagccgctgccggttaaggcacaccgaagtgctcccagccgag
gaggaaaatgacaacttgagtgtagaaagtgctcagggagctggagctgttgaatcagca
gcaggcgtgctgataaaactcttctgtgtgcacaccaaggccctgcaggatgtgcagatt
agatttcagcctcttcatagccctgatgtgagtgcatccatgccttctcatgcctctcac
gaagaatttgtctttccagaccatatggctgatctaagcacagaagggctgggatctgag
aaaggatcagtgcacggctctcaaccagacctgcggcgtattgctgatctgcctgtacca
gctgacttcctctctctctcaaatgatgccaaacctaagctgatgactcctgatgcattc
atgacaccaagtacatctcttcaacagatcgctatatctccaggcagcagcgttagttcc
ctgactgcagtcacagccatgagtagcacttctgtcacagatgcctctatgcccaggcca
tcggaagacttgactgtgagccccaagatgcagctggataccagcctcacgctgagcagc
agtagcagcagtctccagactagtcctaggagccatgcagttcttattccaggcctccct
gacaagctagcaccaaaggcacctgttcccgtcacaccaggaaacccctctctagcactg
gaactgcaggagctggagcccttggtagtgcctcaggcttctcccacacgtgagcgctcg
ccggatgtcatttcctctgcttccacagccatgtcccaggatattccagagattgcttcc
gagaccttgcaacggagctttggggcagctccatctgggctttctgcagaggtgctggag
cccagtcatcatgtagacagtatggcatccgctgcctcagccttgcatttgctgtctcca
aggaaccggcacaattcagagcacagccaccactctttggacatgcctccagtggaggtg
gacagactgaatgctccatcgttactggagactgctttaactcaggaaaatgcatcttct
gacagtgttgtgagtcagccatggccagcagctcctgacataaccagagaaaccaggaac
agcatggcagacagcccaagggatgaggttgaagaaaagcacaagagctcttcctatcat
cgacacagctaccacctgctgcagcatgacagccaggatgctagtgcagaacaaagtgac
catgatgatgaagttgcaagcttggcttctacatcaggtggatttggtgccaaagcatcg
acgcagaggctgcctgtgaaggattggaaagccaaggcatccccccgggcttccccaaag
ctaaagcggaagggcaagaaagatgatggagatgtgaaccagtcgccaagatcatctaac
aaccaggtgacaccagagttccaggatgagctgatgtgcatattgaggaaccaacagcgg
gagctctctgagctgcgtcagaatcagatggaactgctgcagaaactcacaaatcacctt
gatgccattcagagctcccttatgggccacgtggagagggtgattgactcccagcaggag
caggagcagagaagactagaccgggcgctgacggaaggacagcagcgcaatgggcagctc
caggagcatctgtctcagcagctatctcagtccctttccactgctgtgtgtaaccgtctg
gagaggacaattcgtgaggagatgaagaagacagtcccccagtgcatttcgaagagcatg
gaccctgttgctggccagctcagtaacactattgccaccaagctcactgctgttgaaggg
acactgaaagagaatatcaccaagctagtgaagtcgaagaaccttacagataccatcgtg
agggcaacagccgataccctgcaggggccgatccagtcagcttacagggaagcgtttcag
agtgtcgtgttgcctgcttttgagaagagctgccagtccatgttccagcaaatcaatgac
acattcaagcagggcacacaggaatatatccaacagcttgagactcacttgaagaacaaa
aaggtacgagaacaggaggccagggatccactgctgaatcagcttcgacagctcatcagc
gcgttccagagcaccacagagcagctggcttccactgtcgcagctagcgtccatgctgag
gtgcagcatcagctgcatattattgtgggcaacatgcaggagtctattttggcccaggtg
cagcgagtcattaaaggagaagtgagcctggctatgaaggagcagcaagcagctgtcacc
tcgagcatcgtccaggcaatgcgctcagcggctgggactccaattccctcagctcacttg
gatttccagtctcagcaaactcacatccttcagctgctccagcagggacacctcaaccaa
gctttccagcaggctctaacagcagctgatctcaacctggtcctgtatgtctgtgagact
gtggatactcagcaagtatttggacagcatccatgcccgctgtcccagcctgtgctgctc
tctctcattcagcagctctcttcagatttgggtactcgtacagaactgaagctgaattac
ttggaagaagcagtgatgcacctggaccacagtgaccccatcacccgagaccacatgggg
tcagtcatgaaccaggtgcggcagaaactcttccagttcctccaggtggaaccccacaac
acgctgagcaagcctgcccgtcgcctcatgatcatgctccagggcctggtcacccccggc
atgacctag
DBGET
integrated database retrieval system
