Cuculus canorus (common cuckoo): 104068662
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Entry
104068662 CDS
T08597
Symbol
TNRC6C
Name
(RefSeq) LOW QUALITY PROTEIN: trinucleotide repeat-containing gene 6C protein
KO
K18412
trinucleotide repeat-containing gene 6 protein
Organism
cuca
Cuculus canorus (common cuckoo)
Brite
KEGG Orthology (KO) [BR:
cuca00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cuca03019
]
104068662 (TNRC6C)
03036 Chromosome and associated proteins [BR:
cuca03036
]
104068662 (TNRC6C)
Messenger RNA biogenesis [BR:
cuca03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
104068662 (TNRC6C)
Chromosome and associated proteins [BR:
cuca03036
]
Eukaryotic type
Gene silencing
piRNA pathway
104068662 (TNRC6C)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TNRC6-PABC_bdg
M_domain
Ago_hook
UBA_7
UBA
RRM_1
RRM_occluded
UBA_NBR1_C
THOC7
Motif
Other DBs
NCBI-GeneID:
104068662
NCBI-ProteinID:
XP_053939559
LinkDB
All DBs
Position
18:12832114..12872020
Genome browser
AA seq
1727 aa
AA seq
DB search
MATGSAQGNFTGHTKKTNGNNGANGALVQSTSNQSALGAGGANGNGNSARVWGMAAGSSS
GLAHCSASGGDGKMDNMMGDSRSQNCWGASNSNAGINLNLNPNANPAAWPVLGHEGTVGA
GNPSSICSPVSAIGQNMGNQNGNPTGTLGAWGNLLPQESTEPQTSTSQNVSFSVQPQNLN
TDGPNNTNPMNSSPNPINAMQTNGLPNWGMAVGMGAIIPPHLQGLPGANGTSVSQVSGGS
GEGMGSSVWGMSPGNPATGNSNSGFSQGNGDTVNSALSAKQNGSSSAVQKEGNGASAWDS
GPPSGPGVLAWGRGGGNGGVGSMHSGAWGHSNRNTSNGVNSEWGKAPNQHSNSDINGKGS
TGWDSSSITSPNPAMQQGNEQINSWAKAAASGTTASEGSNDSGGSQNEGSTGREGAGEGR
RRDKGMIDQGQVQLPRNDLDPRVLSNTGWGQTPVKQNTAWEFEESPRSERKNDNGTEAWG
CAATQSSNSGGKNDGSIMNSTNTSSVSGWVNSPPAAVPTNTGWGDNNNKAPNGPAGWGES
ASSTTVNNAAAAKSGHAWTGTANQEDKSPTWGEPQKPKSQNWGDGQKSNASWTSGGGDWT
DSSSVPGHLGDGKKNGSGWDSDSRSGSGWNDSTRSGTSGWGNGTNSKANTGTSWGESLKL
GPQQNWANKPQDNNVSNWGGAASVKQTGSGWVGGPVPAKQKENCEATGWEEPSPPSIRRK
MEIDDGTSAWGDPNYNNNKTVNMWDRNNPIIQSSTTTNTTTTSTIINSNMVEPQPSHQSS
AREPSPPLLGPAGWGEMPTVHTKTEASWGEPSSPSAAVDNGTSAWGKPPSSGQVWGDNPA
EPAGTYGRTNAPAAAPALCKPASKSMQEGWGSGGDEVNLSTSQWEDEEGDMWNNTASQES
SSSCNSWGNAPKKGLQKGMKTSSKQDEAWIMNRLIKQLTDMGFPREPAEEALKSNNMNLD
QAMSALLEKKVEMDKRGMGVTDYNGIVTKPLGCRPPPISKESSMDRPTFLDKLTLSFSNQ
DGGLVEEPTTSPFLPSPSLKLPLSNSALPNQTLGGIASGLGMQNLNSSRQIPSGNLGMFG
NSGAAQARTMQQPQQPPVQPLNSSQPSLRAQVPQFLSPQVQAQLLQFAAKNIGLSPAQLT
SPINNPQHMTMLNQLYQLQLAYQRLQIQQQMLQAQRNVSGPMRQQEQQVARTINNMQQQI
QQHQRQLAQALLMKQQPPPPHLSLHPSAGKSAMDSFSPHPQAPGLPDLQTKEQQSSPNTF
APYPLAGLNPNMNVNNMDITGGLSVKDTSQSQSRLPQWTHPNSMDNLSSAASSLDQNSSK
HGAVPGGLSIGPPGKSSIDDSYGRYDLIQNSESPASPPVAVPHSWSRAKTDSDKISNGSS
INWPPEFHPGVPWKGLQNIDPENDPDVTPGSVPTGPTINTTIQDVNRYLLKSGGSSPTSS
QNATLPSSSAWPLSASGYSSSFSSIASAPSIAGKLSDIKSTWSSGPISHTQASLSHELWK
VPRNTTAPTRPPPGLTNTKPSSTWGASPLGWTSSYSSGSAWSTDSSGRTSSWLVLRNLTP
QIDGSTLRTLCLQHGPLITFHLNLTQGNAVVRYSSKEEAAKAQKSLHMCVLGNTTILAEF
AGEEEVNRFLAQGQPLPPTSSWQSNTGTNQTRLGSSSSSHGLVRTDAGHWNPPCLGGKGS
SDLLWGGVPQYSSSLWGPPSADDGRVIGSPTPLNTLLPGDLLSGESI
NT seq
5184 nt
NT seq
+upstream
nt +downstream
nt
atggctacagggagtgcccaaggcaacttcactggacatacaaagaaaactaatggcaat
aatggcgccaacggagcactcgtccaaagcacttctaaccagagtgcccttggagctggt
ggagcaaacggcaacggcaactcggccagagtgtggggtatggctgcgggctccagctct
ggcctagctcactgctctgccagcggcggggatggaaagatggacaacatgatgggagat
agtagaagtcagaactgctggggtgcttccaactcgaatgctggcattaatcttaacctt
aatcctaatgccaatccagctgcctggcctgtacttggacatgaaggaactgtgggagca
ggcaacccttccagtatttgcagtccggtcagtgccataggtcagaacatgggcaaccag
aatgggaacccaacaggcaccttaggtgcttggggaaacttgttgccgcaagagagcaca
gaaccacaaacgtccacttctcagaatgtgtctttcagcgtacaacctcagaaccttaac
actgatggaccaaataacactaaccccatgaactcttcaccaaaccctatcaatgcaatg
cagacaaatggactgccgaactgggggatggctgttggtatgggggccatcatcccgccc
cacctgcaaggccttcctggtgctaacggaacatcagtttctcaagtcagtgggggcagt
ggtgaaggaatgggcagttcagtgtgggggatgtccccaggtaatcctgccacaggaaac
agtaattctgggttcagtcaggggaatggagacactgtgaactcagcgttaagtgctaaa
caaaatggatccagcagtgctgtgcaaaaggaaggaaacggagcgagcgcgtgggattcg
gggcctccttctggtcctggggtactagcgtggggccggggcggtggcaatggcggtgtt
ggtagtatgcattctggagcttggggccactccaaccgtaacaccagtaacggtgtgaac
agtgagtggggcaaagccccaaaccagcattccaatagcgacatcaatgggaaaggatca
acagggtgggatagctctagcattaccagtcccaatcctgccatgcagcagggcaatgaa
caaataaactcttgggccaaagctgcagcatctggcaccaccgctagcgaaggaagtaat
gacagcggtgggagtcaaaatgaaggcagtactgggagggagggggctggagaaggcagg
aggagagacaaagggatgatagaccaagggcaggttcagttgccaagaaatgaccttgac
cccagggtcctgtccaatacggggtggggacagacccctgtaaagcaaaacactgcctgg
gaatttgaagagtccccaaggtctgaacgaaagaatgacaatggaacagaggcctggggt
tgtgcagctactcagtcttcaaactcaggggggaagaacgatgggtccatcatgaacagt
acaaatacctcttcagtatctgggtgggtcaactctccaccggcagctgttccaacaaat
acaggttggggagacaataacaacaaagcaccaaatggcccagcggggtggggagagtca
gcaagctctactactgttaataatgctgctgctgccaaaagtggccacgcttggactggg
accgcaaatcaggaggacaaatcgcctacctggggtgaacctcagaaacccaaatctcaa
aactggggagatggacagaaatcaaatgcaagctggacttcaggaggtggagattggaca
gattcatcatctgttcctggacacttgggtgatgggaagaaaaatggatctggatgggat
tctgacagtagatcggggtctggttggaatgattccacaaggtctgggaccagtgggtgg
ggaaatggcacaaacagcaaggctaatacaggtacaagttggggggaatctttaaagcta
ggcccccaacaaaattgggctaataaaccccaggacaacaatgtgagtaactggggagga
gctgcttctgtaaaacagacggggtcggggtgggttggtgggccagtgccagccaaacaa
aaagagaactgtgaggcaactggctgggaagagccatctccaccgtccattcgccgcaag
atggaaatcgatgatggtacctcagcgtggggcgacccaaattacaacaacaacaagact
gtaaacatgtgggatagaaataatcctataatccagagcagtaccacaaccaataccacc
accactagcaccattatcaactcaaatatggttgaacctcagccgtcgcaccagtcaagt
gcccgcgaaccgtcccccccgctgcttggtccagcaggctggggagaaatgcctactgtc
cacaccaagaccgaagcttcttggggagagccgtcttccccttctgctgcagtcgataat
ggcacttcggcctgggggaagccccccagcagtgggcaggtgtggggagataatcctgcc
gagccagcagggacgtatggaagaacaaacgctccagctgctgccccagcactgtgcaaa
ccagcttcaaaatctatgcaagaaggctggggcagtggtggggatgaagtgaatctcagt
actagtcagtgggaagatgaagaaggagatatgtggaataatactgcttcacaagagagc
agctcctcctgtaattcttgggggaacgccccaaagaaaggacttcaaaagggcatgaag
acatctagcaagcaagatgaggcctggatcatgaaccgcctgatcaaacagctcacagac
atgggcttccctagagagccagcggaagaggccttgaagagcaacaatatgaatctcgat
caggccatgagtgctctgctggaaaagaaggtggaaatggacaagcgtggaatgggagtg
accgactataatggaatagtcaccaaaccccttggctgccgcccaccaccaatctccaaa
gagtcttccatggaccgccccaccttccttgacaagctcaccctttctttctccaatcag
gatggcggcctagtggaagagcccactacttcaccatttttgccttcaccaagcctgaag
ctccccctttcaaacagtgcactccctaatcagaccctgggtgggattgcctcagggctg
ggcatgcaaaacttgaattcttctagacagataccaagtggcaatctgggtatgtttggc
aatagcggagcagcacaagccaggaccatgcaacagccgcagcaaccgccagtgcaacct
cttaattcatcccagcctagtcttcgtgctcaagtgcctcagtttctatcccctcaggtt
caagcacagcttttgcagtttgcagcaaaaaacattggtctcagccctgcacagttaacc
tcgccaattaataatcctcagcatatgacgatgttgaaccagctctatcagctgcagctg
gcgtaccaacgtttacaaatccagcagcagatgttacaggctcagcgtaacgtttccgga
cccatgagacaacaggagcagcaagttgcacgtacaatcaataacatgcagcagcagatc
cagcagcaccagcgccagctggcccaggccctgctgatgaagcagcagcctccccctcca
catctatctttgcacccctctgcaggcaaatcagccatggatagcttttcaccccatccc
caggctcccggccttcctgacctgcagaccaaagagcaacagtcttcaccgaacaccttt
gctccttaccctcttgctggactgaacccgaacatgaatgtaaataacatggacattact
ggtggtttgtcagtgaaggacacttctcagtcccagtctcgccttcctcagtggacacac
cccaactcaatggataatctgtctagtgctgcttcttcacttgaccagaactccagcaag
cacggtgctgtacctggaggtttaagtattggtcctccaggaaagtcctccattgatgac
tcttacggccggtatgatctgattcagaacagtgaatcgcccgccagtccgcctgtagct
gttcctcacagctggtcacgtgccaaaaccgatagtgataagatttccaatggctccagc
ataaactggccaccagagtttcatccaggagtgccatggaaaggcctgcagaatattgat
cctgaaaatgaccccgatgttactcctggaagtgttccaactgggcctaccataaacacc
acaatacaggatgttaatcgctatcttctcaagagtggagggtcatccccaacatcatct
cagaatgccacgctgccttcatcgagtgcctggccgcttagtgcctccggctacagtagc
tctttcagcagcattgcatccgcacctagcattgcaggtaaactgtcagacatcaagtct
acgtggtcctctggcccaatctctcacacgcaagcctctctgtcccatgaactatggaag
gtacccagaaacactactgctcctacgagaccgcctccaggcttaaccaacaccaagcca
tcgtctacatggggtgccagtcccctgggctggaccagctcctactcctctggttctgcg
tggagtactgacagctcggggagaacaagcagctggctggttcttcgcaacctcacaccc
cagattgatggttccacactgcggacactgtgtttgcaacatggccctctaataacattc
cacttgaacctgacacaagggaatgctgtggtccgatacagttccaaggaagaagcagcc
aaggcccagaagtctctgcatatgtgtgtcctaggaaacactaccatcctggccgagttt
gctggggaagaggaagtcaaccgtttcttagcacaaggccagccgctgccgcccacctcc
agctggcagtccaacactggaaccaaccagactcgcctgggctcctcgagcagctcgcac
ggcctggtgcgcaccgacgccggccactggaaccctccgtgcctggggggcaagggcagc
agcgacctgttgtgggggggggtgcctcagtactccagcagcctttggggaccccccagc
gccgacgacggcagagtcatcggcagcccgacacctttgaatactcttcttccgggtgat
cttctcagtggagagtccatctag
DBGET
integrated database retrieval system
