Cuculus canorus (common cuckoo): 104068687
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Entry
104068687 CDS
T08597
Symbol
SUPT5H
Name
(RefSeq) transcription elongation factor SPT5 isoform X1
KO
K15172
transcription elongation factor SPT5
Organism
cuca
Cuculus canorus (common cuckoo)
Pathway
cuca03250
Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:
cuca00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
104068687 (SUPT5H)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cuca03021
]
104068687 (SUPT5H)
03019 Messenger RNA biogenesis [BR:
cuca03019
]
104068687 (SUPT5H)
Transcription machinery [BR:
cuca03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription elongation factors
104068687 (SUPT5H)
RNA polymerase I system
104068687 (SUPT5H)
Messenger RNA biogenesis [BR:
cuca03019
]
Eukaryotic type
mRNA processing factors
3' end processing
DRB sensitivity inducing factor (DSIF) complex
104068687 (SUPT5H)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
KOW4_SPT5
KOW
KOW2_Spt5
KOW5_SPT5
KOW7_SPT5
Spt5-NGN
KOW6_SPT5
KOWx_SPT5
Spt5_N
KOW1_SPT5
GPKOW_C
DUF3912
Ribonuc_P_40
Motif
Other DBs
NCBI-GeneID:
104068687
NCBI-ProteinID:
XP_053908926
LinkDB
All DBs
Position
37:1127657..1142851
Genome browser
AA seq
1082 aa
AA seq
DB search
MSDSDDSNFSEDESERSSEAEEAEEAEAEEERVSAGGSEKEEPEEEEEEEEEEYDEEEEE
EDDDRPAKKPRHGGFILDEADVDDEYEDEDQWEDGAEDILEKEEIEASNIDNVVLDEDRS
GARRLQNLWRDQREEELGEYYMKKYAKSSVGETVYGGSDELSDDITQQQLLPGVKDPNLW
TVKCKIGEERATAIALMRKFIAYQFTDTPLQIKSVVAPEHVKGYIYVEAYKQTHVKQAIE
GVGNLRMGYWNQQMVPIKEMTDVLKVVKEVTNLKPKSWVRLKRGIYKDDIAQVDYVEPSQ
NQISLKMIPRIDFDRIKARMSLKDWFAKRKKFKRPPQRLFDAEKIRSLGGDVASDGDFLI
FEGNRYSRKGFLFKSFAMSAVITEGVKPTLSELEKFEDQPEGIDLEVVTEGTGKEREHNF
QPGDNVEVCEGELINLQGKILSVDGNKITIMPKHEDLKDMLEFPAQELRKYFKMGDHVKV
IAGRFEGDTGLIVRVEENFVILFSDLTMHELKVLPRDLQLCSETASGVDVGGQHEWGELV
QLDPQTVGVIVRLERETFQVLNMYGKVVTVRHQAVTRKKDNRFAVALDSEQNNIHVKDIV
KVIDGPHSGREGEIRHLFRGFAFLHCKKLVENGGMFVCKTRHLVLAGGSKPRDVTNFTVG
GFAPMSPRLSSPIHPSGAGQRGGFGGAGMSRGRGRRDNDLIGQTVRISQGPYKGYIGVVK
DATESTARVELHSTCQTISVDRQRLTTVGSRRPGGMASAYGRTPMYGSQTPMYGSGSRTP
MYGSQTPLHDGSRTPHYGSQTPLHDGSRTPAQSGAWDPNNPNTPSRADEDFEYGFEDEPT
PSPQGYGGTPNPQTPGYPDPASPQVTQPYNPQTPGTPAMYNTEQFSPYAVPSPQGSYQPS
PSPQGYHQVAPSPVGYQNTHSPASYHPTPSPMAYQASPSPSPVGYSPMTPGAPSPGGYNP
HTPGSGIEQSSSDWVTTDIQVKVRDTYLDSQAVGQTGVIRSVTGGLCSVYLTDSEKVVSV
ASEHLEPLTPAKSNKVKVILGEDREATGILLSIDGEDGIVRMDLEEQLKILNLRFLGKLQ
EA
NT seq
3249 nt
NT seq
+upstream
nt +downstream
nt
atgtcagacagcgacgacagcaatttctcagaggatgagagcgagcgcagcagcgaagct
gaagaggccgaggaagccgaggccgaggaggagcgcgtgagcgcaggtggcagcgagaag
gaggagccggaggaggaagaggaagaagaggaagaggagtacgatgaggaagaagaagag
gaagatgacgatcgtcctgctaagaagcctcgtcatggtggcttcatcttggatgaagcc
gatgtcgacgatgagtacgaggatgaagatcagtgggaggatggggccgaggacatcctg
gagaaagaggagatcgaagcttccaacatcgacaacgtggtgctggatgaggatcgctcc
ggcgcccgacggctccagaacctctggagagatcagcgcgaggaggagttaggagagtat
tacatgaagaaatatgccaagtcttccgtgggtgagacggtctatggtgggtcggacgag
ctctccgatgacatcacgcagcagcagctcctgcccggagtcaaggatcccaacctctgg
accgtcaagtgcaagatcggtgaggagcgcgccactgccattgccctcatgcgcaagttc
atcgcctaccagtttaccgacacgccactgcagatcaagtcagtggtggctcctgagcac
gtgaagggctacatctacgtggaggcatacaagcagacacacgtcaagcaggcaattgag
ggcgttggcaacctgcggatgggctactggaaccagcagatggtgcccatcaaggagatg
actgacgtcctcaaggtggtgaaggaggtcaccaacctcaaacccaagtcgtgggtgcgc
ctcaagcgcgggatctacaaggacgacattgcccaggtggactacgtggagcccagccag
aaccagatatccctcaagatgatccctcgcatcgatttcgaccggatcaaggcccgcatg
agcctgaaagactggtttgccaagaggaagaagttcaagcgcccaccgcagcgcctcttt
gatgccgagaagatccggtccctgggaggtgatgtggcctccgatggcgacttcctcatc
ttcgaaggcaaccgctacagccggaagggcttcctcttcaagagctttgctatgtcagct
gtgatcacggaaggggtgaagccaacgctttcagagctggagaagttcgaggaccaaccg
gaaggcatcgacctggaagtggtgaccgagggcacaggaaaagagcgggaacacaacttc
caacccggagacaacgttgaggtgtgcgaaggcgaactcatcaaccttcagggcaagatc
ctcagcgtcgatggcaacaagatcaccatcatgcccaaacatgaggacctgaaggacatg
ctggagttcccggcgcaagagctgcgcaagtacttcaagatgggcgaccacgtcaaggtg
atcgccgggcgcttcgagggcgatacagggctcattgttagggtggaggagaacttcgtc
atccttttctctgacctcaccatgcacgagctcaaggtactcccgcgggaccttcagctc
tgctcagagacagcatccggcgtcgatgttggggggcaacacgagtggggggaactggtc
cagttggatcctcaaaccgttggcgtcatcgtccgccttgaacgcgagaccttccaggtg
ctcaacatgtatgggaaggtggtgaccgtgcggcaccaggctgtcacccgcaagaaggac
aatcgctttgccgtcgccctcgactccgagcagaacaacatccatgtcaaggacatcgtc
aaagtcatcgatgggccccactcgggccgcgagggtgagatccgacaccttttccggggc
ttcgctttcctgcactgcaagaaactggtggagaacgggggcatgttcgtctgcaagacg
cggcacctcgtgctggcggggggctccaagccacgtgacgtcaccaacttcaccgtgggc
ggctttgcgccgatgagcccgcggctcagcagccccatacaccccagcggcgccggccaa
cgcggcggcttcggtggcgccgggatgagccgcgggcgtgggcgccgcgataacgacctc
atcgggcagacggtgcgcatctcccaagggccctacaaaggctacattggcgtcgtgaag
gacgccaccgagtcgacggcgcgcgtggagctccattccacctgccagaccatctcggtg
gaccggcagcggctcaccactgtgggttcgcggcgccctggcgggatggcttcggcctac
gggcgcaccccaatgtacggctcgcagacccccatgtacggctcggggtcccgcaccccc
atgtatggctcgcagacccccctgcacgacggctctcgcactccccactatgggtcacaa
acgccgctgcacgacggcagccgaacacctgcccagagtggggcatgggaccccaacaac
cccaacaccccctccagggcggacgaggacttcgagtatggcttcgaggatgagccgaca
ccgtcgccgcagggttatggggggactccgaacccccaaactccggggtaccctgatccc
gcgtccccccaggtcacacagccctacaacccccagacccctggcacccctgccatgtac
aacacggagcagttctcgccgtacgcggtgccgtcaccgcagggctcgtaccagcccagc
ccgagcccgcagggataccatcaggtggccccaagccccgtgggctaccagaacacccac
tcgccggccagttaccaccccacgccgtcccccatggcctaccaggccagcccgagcccc
agccccgtgggctatagcccgatgacgccgggagcgccgtcccctggggggtacaacccc
cacacccctggctcgggcatcgagcaaagctccagcgattgggtcaccaccgacatccaa
gtcaaggtacgcgacacctacctggacagccaggccgtggggcagaccggcgtcatccgc
agtgtcaccggcgggctctgctctgtgtacctgaccgatagcgagaaggtggtcagtgtg
gccagtgagcacctcgagcccctcaccccggccaagagcaacaaggtgaaggtgatcctg
ggcgaggaccgcgaggccacggggatcctgctgagcatcgatggtgaggatggaatcgtc
cgtatggacctggaggagcagctcaagatcctcaacctgcgcttcctggggaagctgcaa
gaggcctga
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