Cuculus canorus (common cuckoo): 104068729
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Entry
104068729 CDS
T08597
Symbol
NFKB1
Name
(RefSeq) nuclear factor NF-kappa-B p105 subunit isoform X1
KO
K02580
nuclear factor NF-kappa-B p105 subunit
Organism
cuca
Cuculus canorus (common cuckoo)
Pathway
cuca04010
MAPK signaling pathway
cuca04210
Apoptosis
cuca04218
Cellular senescence
cuca04620
Toll-like receptor signaling pathway
cuca04621
NOD-like receptor signaling pathway
cuca04622
RIG-I-like receptor signaling pathway
cuca04623
Cytosolic DNA-sensing pathway
cuca04625
C-type lectin receptor signaling pathway
cuca04920
Adipocytokine signaling pathway
cuca05132
Salmonella infection
cuca05164
Influenza A
cuca05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
cuca00001
]
09130 Environmental Information Processing
09132 Signal transduction
04010 MAPK signaling pathway
104068729 (NFKB1)
09140 Cellular Processes
09143 Cell growth and death
04210 Apoptosis
104068729 (NFKB1)
04218 Cellular senescence
104068729 (NFKB1)
09150 Organismal Systems
09151 Immune system
04620 Toll-like receptor signaling pathway
104068729 (NFKB1)
04621 NOD-like receptor signaling pathway
104068729 (NFKB1)
04622 RIG-I-like receptor signaling pathway
104068729 (NFKB1)
04623 Cytosolic DNA-sensing pathway
104068729 (NFKB1)
04625 C-type lectin receptor signaling pathway
104068729 (NFKB1)
09152 Endocrine system
04920 Adipocytokine signaling pathway
104068729 (NFKB1)
09160 Human Diseases
09172 Infectious disease: viral
05164 Influenza A
104068729 (NFKB1)
05168 Herpes simplex virus 1 infection
104068729 (NFKB1)
09171 Infectious disease: bacterial
05132 Salmonella infection
104068729 (NFKB1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
cuca03000
]
104068729 (NFKB1)
Transcription factors [BR:
cuca03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
RHR (Rel homology region) Rel/Ankyrin
104068729 (NFKB1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RHD_DNA_bind
Ank_2
RHD_dimer
Ank
Ank_4
Ank_3
Ank_5
Death
Motif
Other DBs
NCBI-GeneID:
104068729
NCBI-ProteinID:
XP_053921662
LinkDB
All DBs
Position
4:53680602..53746133
Genome browser
AA seq
989 aa
AA seq
DB search
MAGEDSYIMSDPQMFTMDQFMGMNALFNNTNYITSDLPLRTADGPYLQIIEQPKQRGFRF
RYVCEGPSHGGLPGASSEKNKKSYPQVKICNYVGPAKVIVQLVTNGKYVHLHAHSLVGKY
CEDGVCTVNAGPKDMVVGFANLGILHVTKKKVFETLETRMIDACKKGYNPGLLVHPELGY
LQADGCGDRQLTEREREIIRQAAIQQTKEMDLSVVRLMFTAFLPDSNGSFTRKLDPVISD
AIYDSKAPNASNLKIVRMDRTAGCVTGGEEIYLLCDKVQKDDIQIRFYEEDENGGMWEGF
GDFSPTDVHRQFAIVFKTPKYRDVNITKPASVFVQLRRKSDLETSEPKPFLYYPEIKDKE
EVQRKRQKLMPNFSDGYGGGSGAGGGGMYGGGGGGAGSGFSYPSYGYSTFGGMHFHPGTT
KSNAGMKHCNSENVVLATGLSNSTAKQDGKSCDKQCDRRDVKHDVKAETMERDECRTSGD
NEEKEDASSCKTEVNEADCRWQDDLFLEKAMQLAKRHCNALFDYAVTGDVKMLLAVQRHL
TAVQDDNGDSVLHLAIIHLHTELVKNLLEVMPDLNYNDIINMRNDLYQTPLHLAVITKQA
EVVEDLLKAGADVSLLDRRGNSVLHLAAAEGDNKILSLLLKHKKVAPMIDLSNGEGLSAL
HIVVMANSMSCLKQLIAAGANVNAQEQKSGRTALHLAVEHENIPLAGCLLLEGDADVDST
TYDGTTPLHLAAGRGLTKLAAVLKAAGANPHIENFEPLFDLDDVQGDDDDDEGIVPGTTP
LDMAANCEVYDILNGKPYEPAMVSEDLLIPGHLRDLNKSSKMHLYKLLEGPDPNKNWSTL
AQKLGLGILNNAFRLSLSPSKTLLDNYEVSGGTVQELMAALREMDHTEAVEVIQKALSLS
QSSSRQEDNAAKALPSSSPPTFTNGKTGDLYDSKFQDNESVCDSGVETSFRKLSFTYSDS
LNSKSSVTISKMTLGYGHESSAQSNYIAN
NT seq
2970 nt
NT seq
+upstream
nt +downstream
nt
atggcaggagaagattcctatattatgtctgatcctcaaatgtttacaatggatcagttc
atgggaatgaatgcattatttaataatacaaattacatcacttcagacttaccactacga
acagcagatggaccttaccttcaaatcatagaacagccaaaacagaggggatttcgtttc
cgatacgtatgcgaagggccttcacatggtggacttcctggtgcttctagtgaaaagaac
aaaaaatcataccctcaggtgaaaatctgcaattatgttggacctgcaaaagtaattgtc
cagttagttactaatgggaaatacgtccacttacatgctcacagcttggtgggtaaatat
tgtgaagatggagtatgcacggttaatgcaggacctaaagatatggttgtagggtttgca
aatcttggaatacttcacgtcacaaagaagaaagtgtttgaaactctggaaacacgcatg
atagatgcttgcaagaaaggttacaacccgggactcctggtgcatcctgaacttggctat
ctgcaggcagatgggtgtggagacagacagctaactgaacgagaaagagaaattattcgt
caagcggcaatacagcagactaaagaaatggatctcagtgtggtgcgtcttatgtttaca
gcctttctacctgacagtaatggtagtttcacacggaaacttgatcctgttatatcagat
gcgatatatgacagcaaagctcccaatgcctccaacttaaaaatcgtaaggatggacaga
acagcagggtgcgtaacaggaggggaagaaatttaccttctctgtgacaaggttcagaaa
gatgatattcaaatacgtttctatgaagaagatgagaatggaggtatgtgggaaggcttt
ggagacttttctcctacagatgtacatagacagtttgctattgtgttcaaaacacccaaa
tatcgagatgtcaatatcacaaagccagcatctgtatttgtacaactgcgtaggaaatct
gacctagaaacaagcgaaccaaagccttttctctactatccggaaatcaaagataaagaa
gaagtgcaaaggaaacgacagaagctcatgccaaatttctctgatggctatggtggaggc
agtggtgcaggaggcggtggcatgtatggagggggaggtggcggcgctggctctgggttc
agttatccttcatatggatactctacttttggaggcatgcatttccaccctggcacaaca
aagtccaatgctggaatgaaacattgtaacagtgaaaatgtggttcttgcaacaggacta
tcaaatagcacagctaagcaggatgggaagagctgtgataaacaatgtgaccggcgggat
gtgaaacatgatgtgaaagcggaaactatggagagggatgagtgcagaacttctggtgat
aatgaggagaaggaggatgcttcttcctgtaaaactgaagtaaatgaagcagattgtagg
tggcaggatgatctgttcctggagaaggccatgcagcttgccaagcgtcactgcaatgct
ctctttgattatgctgtaactggagatgtgaagatgctgttggctgttcagcgccatctc
actgctgtccaggatgacaatggagacagtgtccttcatttagcaattatccatcttcat
actgagctggtgaaaaacctcttggaagtgatgcctgatctgaattataatgacatcatt
aacatgagaaatgacctttatcagacgcccttgcacctggcagtaatcacaaagcaggcg
gaggtggtagaagacttgctgaaggctggagcagatgtcagccttctggatcgccgtggt
aattctgtcttacatttagctgctgctgaaggagacaacaagattttgagtctacttctc
aagcataagaaggtagctccaatgatcgacctttccaatggtgaaggtctcagcgcactt
cacatagtggtgatggcgaatagcatgtcctgcctcaaacagctgattgctgctggagct
aatgtcaatgctcaggaacaaaaatctggacgaactgcgttgcatttagctgttgaacat
gagaacatccctttggcaggctgccttctgcttgagggtgatgcagacgtggacagcact
acatatgatgggacaactcctcttcacttagcagctggaaggggcttgacaaaattggca
gcagttcttaaagcagcaggtgcaaatcctcacattgagaactttgagccattatttgac
ctagacgatgtgcaaggtgatgatgatgacgatgaagggattgtgcctggaacaacacca
ctggatatggcagccaactgtgaggtgtacgacatattaaatgggaaaccctatgagcca
gccatggtttcagaggacttactgataccaggacacttgagagatctgaacaaaagctcc
aagatgcacctttacaaactattggaaggacctgatccaaacaagaactggtccactcta
gcacaaaaactaggtcttggcatacttaacaatgccttcaggctgagcctttccccatca
aaaactctgctagataactatgaggtttctggtggtacagttcaggagttgatggctgct
ttgagagagatggatcacacagaagccgttgaagtcattcagaaagcactatccctctca
caaagctcatctcgccaggaggataatgcagcaaaagctcttccatcatcatcaccaccc
acctttacaaatggaaagacaggcgacctttacgatagcaaatttcaagacaatgaaagt
gtgtgtgacagtggtgtggaaacctccttccgcaaactgagctttacttattcagactct
ctgaacagcaagtcatcagtaacaattagcaaaatgactctgggctatggacatgaaagt
tcagcgcaaagcaattatatagccaactag
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