Cuculus canorus (common cuckoo): 104068794
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Entry
104068794 CDS
T08597
Symbol
TRIM54
Name
(RefSeq) tripartite motif-containing protein 54 isoform X1
KO
K10653
tripartite motif-containing protein 54
Organism
cuca
Cuculus canorus (common cuckoo)
Pathway
cuca04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
cuca00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
104068794 (TRIM54)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
cuca04121
]
104068794 (TRIM54)
Ubiquitin system [BR:
cuca04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRIM/RBCC proteins
104068794 (TRIM54)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-RING_UBOX
zf-C3HC4_2
zf-C3HC4
RING_XB3-XBAT31
zf-RING_5
zf-RING_2
zf-B_box
zf-C3HC4_4
zf-C3HC4_3
zf-RING_6
Sina_RING
CYP38_PsbQ-like
DUF5799
RHH_9
Zn_ribbon_FGT1_2
DUF1978
Motif
Other DBs
NCBI-GeneID:
104068794
NCBI-ProteinID:
XP_053918626
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Position
3:complement(66537420..66542957)
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AA seq
380 aa
AA seq
DB search
MNFAVGLKPLLAEARSMESLEKQLICPICLEMFSKPVVILPCQHNLCRKCANDVFQASNP
LWQSRGPSAVPSGGRFRCPSCRHEVVLDRHGVYGLQRNLLVENIIDIYKQESARPLHAKA
EQHLMCEEHEDERINIYCLRCEAPTCSLCKVFGAHKDCEVAPLPAVYQRQKSELSDGIAM
LVAGNDRIQAIITQMEEICHTIEENGRRQKQHLGLRFDALYGILEERKKELLQSIAQEQE
EKVQHVRGLIRQYGDHLEASSKLVESAIQAMEEPQMAVYLQHSKELLKKIMDMSKVPMSS
RPEPGYESMDHFSVNVDCVAEMLRTIEFQTEPLGEEDADGAGDGSEVVADEERLDSMEAA
EATEDAGPRQKPLSSPHGQH
NT seq
1143 nt
NT seq
+upstream
nt +downstream
nt
atgaacttcgcggtggggctgaagccgctgctggcggaggcgcggagcatggagagcctg
gagaagcagctgatctgccccatctgcctggagatgttctccaagcccgtggtcatcctg
ccctgccagcacaacctctgccgcaagtgcgccaacgacgtcttccaggcgtccaacccg
ctgtggcagtcgcggggtcccagcgcggtaccgtcgggcgggcggttccggtgcccgtcg
tgccggcacgaggtggtgctggaccggcacggggtgtacgggctgcagcggaacctgctg
gtggagaacatcatcgacatctacaagcaggagtccgccaggcccctgcacgccaaggct
gagcagcacctaatgtgtgaggagcacgaggatgagcgcatcaacatctactgtctgcgc
tgtgaggcacccacctgctccctctgcaaggtcttcggggcacacaaggactgcgaggtc
gccccattgcctgctgtctaccagagacagaagagcgaactcagtgacggcatcgccatg
ctagtggcaggcaacgaccgcatccaggccatcatcacacagatggaggagatctgccac
accattgaggagaatgggcggcggcagaagcagcacctggggctgcgcttcgatgctctg
tacggcatcctggaggagcggaagaaggagctgctgcagagcatcgcacaggagcaggag
gagaaggtgcagcacgtgcggggcctcatccggcagtacggagaccacctagaggcctcc
tccaagctggtggagtcagccatccaggccatggaggagccccagatggccgtgtacctg
cagcactccaaagagctcctgaagaagatcatggacatgtccaaggtgcccatgagcagc
cgccctgagccgggctacgagagcatggaccacttctccgtcaacgtggactgcgtggcc
gagatgctgcgcaccatcgagttccagacagagccgctgggcgaggaggacgcggatgga
gccggggacggcagcgaggtcgtggctgacgaggaacggctggacagcatggaggcggct
gaagccaccgaggatgcggggccgaggcagaagccgttgagctccccccatggtcagcac
tga
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