Cuculus canorus (common cuckoo): 104068961
Help
Entry
104068961 CDS
T08597
Symbol
HPS5
Name
(RefSeq) BLOC-2 complex member HPS5
KO
K20191
Hermansky-Pudlak syndrome 5 protein
Organism
cuca
Cuculus canorus (common cuckoo)
Brite
KEGG Orthology (KO) [BR:
cuca00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
cuca04131
]
104068961 (HPS5)
Membrane trafficking [BR:
cuca04131
]
Endosome - Lysosome transport
Others
BLOC-2 complex
104068961 (HPS5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_HPS5
Beta-prop_HPS5
WD40_WDHD1_1st
PEP5_VPS11_N
Beta-prop_EML_2
Beta-prop_RIG_2nd
WD40_CDC20-Fz
ANAPC4_WD40
Beta-prop_IFT140_2nd
Beta-prop_Vps41
Beta-prop_WDR36-Utp21_1st
Beta-prop_VPS8
Beta-prop_RIG_1st
Motif
Other DBs
NCBI-GeneID:
104068961
NCBI-ProteinID:
XP_053925135
LinkDB
All DBs
Position
5:complement(40572629..40595232)
Genome browser
AA seq
1135 aa
AA seq
DB search
MASVPVIPDSYNHVLAEFECLDPLLSALRLDSSRLKCTCIAVSKRWLALGSSGGGLNLIQ
KDGWKQRLFLTHKEGAISRIACCLYDEDYVAVATSQGLVVVWELNQERRGKPERIYVSSE
HKGRKVTALCWDTAALRVFVGDHVGKVSAIKINTSKQGKAAATFVMFPVQIITTIDSRVV
QLDYLDGRLLISSLTRTYLCDTEREKFWKIGNKERDGEFGACFFPVGKNSGNQQPLIYCA
RPGSRMWEVNFDGEVQSTHQFKQLLSSPPLPVVTLRMDPHYTSSSCSPQSLSFPKLLYLT
EHCVMTWTERGIYIFLPQSVQVLLWSEVKDIQDIAVYKNELFCLHTNGKVVHLSLLLVDR
CIERLMRRGFWTLSARVCCLFQNSVISCRARKNLPLDKLEHLKSQLDASSQQDLITQLEE
LISKLEPLDSASSSRRSSISSHESFSVLDSGIYRVISRRGSQSDEDSCSLHSQTFSEDER
LKEFPAHQEDEQVDLDNVSHASVTVEADRNETFLPFSIPLSFRSPSPLVSLQAVKESVSS
FVRKTTEKIGTLHISPDARGRQEAKDDEQLPELTVNLVAPPQEEKELEPQSCQLPEEDHL
RDLKAATAEAIAKLQDPLVLLEPQRMRRVLQEWLVFLEEKFGSREHSASFVKECKVWCAE
EEMSVLEENLQLHLADGDLADKQQNGILEDCTEKENMDETCVSKTMCENSTDAKGPLDCC
FQVFPPCVIEPDVRKDLVELTTLCFELCVFSCGSGETQESSDGSLPLAASWILACGFLRS
YFFLLDLKRLKRCIITMYADSPNVWETYIAGLKELTCHSPVTLAMENEDMLKILRQLHDL
GPWDDSPLLLVHAQRLYEKFGDLALRPLIKFHPSILPSDIKQICRNDPAHFLAYLDSLVK
SKPEDKRSSLLRSLLQPESVRLDWLRLAVSRDAPQRTNTLDAEGNPRPRSHLFTWGYSQL
ILLLIKLPADFVTKKQMADICKSHGFWPGYLFLCLELDRRIEAFTNIAHLDDLSLLNGED
GSIPETIEEWKFLLHLAQNHSTAFHHCGPQNGNAISNGSPSCPDCITVENVSLLLAKAIG
PNRALQLLQDCGLTLELSERFTGVCEILRIAEKRQRALIQSMLERCDRFLWSQQT
NT seq
3408 nt
NT seq
+upstream
nt +downstream
nt
atggcctctgtgccagtaattccagactcttataaccatgtgttggcagagtttgaatgc
ttggatccgttgctttctgcgctcaggctggattctagtcgtctgaagtgcacgtgtata
gctgtgtcaaagagatggctggctctaggcagttcaggaggaggactgaaccttatacag
aaagatggctggaagcaaagactctttctgactcataaggaaggtgccatttcccgcatc
gcctgttgtttatacgatgaagactatgttgctgttgccaccagccaaggtctcgtagta
gtgtgggagctgaatcaggaacgtcgtgggaagccagaacggatttatgtttcctctgag
cataagggcagaaaagtcacagctctgtgttgggatacagctgcccttcgtgtttttgta
ggtgatcatgtgggaaaagtatcagccatcaagattaacacttcgaaacaagggaaggct
gctgctacttttgtgatgtttcctgttcagattataaccaccatagattctcgggttgtt
cagcttgattatttggatggaagactgctcatatcttcacttacacgcacttatttgtgt
gatactgagagagagaagttctggaaaattggtaataaagagagagatggagaatttgga
gcatgcttcttccctgttgggaaaaacagtgggaatcagcagccattaatatattgtgct
cgacctggctcaaggatgtgggaagtgaacttcgatggggaagtgcaaagcacacatcag
ttcaagcagctgctctcatcaccacctctccctgttgttactctcaggatggatcctcat
tatacaagttccagctgctctccacaatctttatctttccccaagctactgtatttaact
gagcactgcgtgatgacctggacagagagaggcatttatatttttcttccccaaagtgtt
caagtcttactgtggagcgaggtaaaagatattcaggatattgcagtttacaaaaatgag
ttgttctgtctgcatacaaatggaaaagttgtgcacctctccctcttgctggtagaccgc
tgcatagagcgtctgatgagaagagggttctggaccctttctgccagagtctgttgtctc
ttccaaaattcagttatttcttgcagagcaagaaaaaatttgcctctagacaagctggag
cacttgaagtctcagctggatgcctcaagccaacaagatctcattacacaactggaagaa
ctaatttcaaagttagaacctttagattctgcaagcagcagtaggaggagcagtatttca
tctcatgaaagcttcagtgtcttagactccggaatatatcgtgttatcagtcgaagaggc
agtcagtcagatgaagattcttgttctctccatagtcaaacgttctcagaagatgagaga
cttaaagaatttcctgcgcaccaggaagatgagcaagtagatcttgacaacgtatctcat
gcatctgtgacggttgaggctgaccggaatgagacatttctcccattcagtattcctttg
tcatttcgttccccatctcctctcgtctctctccaagctgtcaaagaaagtgtttccagc
tttgtacgcaaaactactgaaaagattggcacacttcatataagtcctgatgctagaggg
aggcaagaagcaaaggatgatgaacagctgccggaattgactgttaatctggtagcacct
ccacaggaagagaaagagttagaaccacagagctgccagcttccagaggaggaccacctg
agagatctcaaggctgcaacagcagaagctatagccaaactccaggatcccctggttttg
ttagaaccacagcgcatgaggagggttttacaggaatggcttgtctttctggaagagaag
tttggcagcagagagcattctgcttcatttgttaaggaatgcaaggtttggtgtgctgaa
gaagagatgtcagtcctggaggaaaatctacaactgcatctagctgatggagacctagca
gacaaacaacagaatggtatcttggaagactgcactgaaaaagaaaatatggatgaaact
tgtgtaagcaaaacaatgtgtgaaaatagtactgatgcaaagggacctttggactgctgc
tttcaagtgtttcctccatgtgtcatagaaccagatgttcggaaagatcttgttgagttg
acaacactgtgttttgagctgtgtgtattttcttgtggaagtggtgagacacaggaaagt
tctgatggaagtctgccacttgcagcttcgtggatcttggcttgtgggtttctgcgaagc
tacttctttcttttggatttaaaaaggctgaagcgatgtattataaccatgtatgcagat
agccctaatgtatgggaaacatacatcgcaggattgaaagaactaacttgtcacagtcca
gtgactttagcaatggaaaatgaagatatgttgaaaatactgaggcagctgcacgacctg
gggccttgggatgatagcccgctgttactggtacatgctcaaaggctttatgaaaaattt
ggggatctagctcttcggcccttgatcaagttccatccttctattttgccttctgatatc
aaacaaatttgcaggaatgatcctgctcactttctagcatatttagatagtctggtgaaa
tcgaagccagaggataaaaggtcatctctccttagatctcttctgcagcccgaatctgta
cgactggattggttgcgtttggcagtttctcgtgatgcaccacaaagaacaaatactttg
gatgcagaaggaaatccaaggccacgatcacatttgtttacttggggctacagccagctc
attctgcttttgattaaactcccagctgattttgttacaaaaaagcagatggctgacatc
tgtaaatcacatggattttggcctggatatctttttctctgtctggagctggatagaaga
atagaagccttcactaatattgctcatttggatgatttgagcctgttgaatggagaagat
ggttccatcccagagaccatagaagaatggaagtttcttctgcatcttgcacaaaatcac
agcacagctttccaccactgtggcccacagaacgggaatgctatcagcaatggtagccca
agctgcccggactgcatcactgtagaaaatgtatctctcttactggcaaaggccattggc
ccaaatcgtgccttgcagctcttgcaggactgtggcttgacactggaactgtctgagaga
tttactggtgtctgtgagatcctgagaattgctgagaaaaggcaaagagcgctgatccag
tccatgttggaaaggtgtgaccgatttttgtggtctcagcaaacatag
DBGET
integrated database retrieval system
