Cuculus canorus (common cuckoo): 128849595
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Entry
128849595 CDS
T08597
Symbol
DHX16
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16
KO
K12813
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 [EC:
5.6.2.6
]
Organism
cuca
Cuculus canorus (common cuckoo)
Pathway
cuca03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cuca00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
128849595 (DHX16)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cuca03041
]
128849595 (DHX16)
Enzymes [BR:
cuca01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
128849595 (DHX16)
Spliceosome [BR:
cuca03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
128849595 (DHX16)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
HA2_C
WHD_HA2
DEAD
AAA_22
AAA_19
AAA_30
Cas3-like_C_2
nSTAND3
SecA_DEAD
Motif
Other DBs
NCBI-GeneID:
128849595
NCBI-ProteinID:
XP_053907952
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All DBs
Position
31:1594094..1642593
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AA seq
1039 aa
AA seq
DB search
MADPVLERWVSGELQELLGMSGRHVPAFLVALARRSRSAEELLERLRETEALRVEEPRVK
AFATELWEKVPRDAPREPPGRAAERAALELQQRSRHYRLVDSDEEGAGPAPSTEPPPPPQ
RRRHLRRRRSESPEEDRSPSPPAPPAPTSSEEPEAEWEASERERLRDLEERDAFAERLRR
RDRQRTRNVLERPDAKAYEEAQKRLRIAEEDQKSMVPELRKRSRREYLEKREREKMEELE
AEIADEELLFGEEALTGAERRELRYKRRLRDLAREYKRAGERERLEKSNRYHIPQESRTK
KIPEREEATGGEEERLAPRDEQRRWEEERIGAAALRFGARDAARRQPAKDYDFVLEEDEM
IQFVSAVQMKGTEPEKEASLSSSERGRQTAQEVRRSLPIFPFRAELVAAIAHHQVLIIEG
ETGSGKTTQIPQYLHEEGYTRGGLKIGITQPRRVAAMSVAARVAVEMGTKLGNEVGYSIR
FEDCTSERTLLKYMTDGMLLREFLTEPDLASYSVVMVDEAHERTLHTDVLFGLIKDIARF
RPDLKVVVASATLDTQRFSAFFDNAPVFRIPGRRFPVDIYYTKAPEADYLEACVVSVLQI
HLTQPPGDILVFLTGQEEIEACVELLQERCRRLGSRLPELLVLPIYANLPSDMQARIFQP
TPPGARKVVVATNIAETSVTIDGIVYVLDPGFCKQKSYSARTGMESLVVTPCSRASANQR
AGRAGRVAPGKCFRLYTAWAFQHELEETPVPEIQRSDLGSLVLLLKSLGINDLIHFDFLD
PPPHETLVLALEQLYALGALNHLGELTTLGRRMAELPVEPMLAKMILASEQYGCTEEVLT
VAAMLSVNNAVFYRPKDKVLHADSARVGFHLPGGDHLVLLNVYNQWVLSGHSVQWCFEHF
VQARALRRARDVREQLEGLRERVELAPTSCAPDYRPLRKAITAGFFYHAARLTRGGYRTV
KHQQTVFIHPNSSLFEEQPRWVLYHELVFTTKEFMRQVIEIESAWLLEVAPHYYQAKELE
DPNARKMPKKVGKSREELS
NT seq
3120 nt
NT seq
+upstream
nt +downstream
nt
atggcggacccggtcctggagcgttgggtgtccggggagctgcaggagctgctgggcatg
agcggccgccacgttcccgccttcctggtggctttggcccggcggagccgcagcgccgag
gagctgctggagcggctgcgggagaccgaggcgctgcgggtggaggagccgcgcgtcaag
gccttcgccacagagctctgggagaaggtgccccgtgacgccccccgggagcccccgggc
cgcgcggccgagcgagcggcgctggagctgcagcagcgcagccgccattaccgcctcgtc
gacagcgacgaggagggcgcggggccggccccgagcaccgaaccaccgccaccgccgcaa
cggcgacgccacctgcgccgacgccgctccgaatcgcccgaggaggacaggagcccctca
ccccccgcgccgccggctccgacgtcgagcgaggaaccggaagcggaatgggaagcgtcg
gagcgggaacggcttcgggatctggaggaacgcgacgccttcgccgaacggctgcgccgc
cgcgaccgccaacgcacgcgcaacgtcctcgagcgccccgacgccaaggcgtacgaagag
gcccaaaagcggctcagaatcgccgaagaagaccaaaaatccatggttccggagctgcgg
aagcgctcgcgccgggaatacctggaaaagcgggagcgggagaagatggaggagttggag
gcggagatcgccgatgaggaactgctcttcggcgaagaggcgctgacgggcgccgagcgc
cgcgagctccgctacaaacggcgcctccgggatttggcgcgggaatacaaacgcgccgga
gagagggagaggctggaaaagagcaaccgctaccacatcccccaggagagccggacgaag
aagatcccggagcgcgaggaagcgacgggaggggaggaagagcgcctggcgccgcgggac
gagcagcggcgatgggaagaggagcgcatcggggcggcggcgctgcgtttcggggcgcgc
gacgccgcccgccggcagcccgcgaaggattacgacttcgtgctggaggaggacgagatg
atccaattcgtcagcgccgtgcagatgaaaggcaccgaacccgagaaggaggcgtcgttg
tcgtcgtcggagcgcggccgtcagacggcgcaggaggtgcggcgcagtctccccatcttc
ccgttccgcgccgagctggtggccgccatcgcccaccaccaggtgctcatcatcgagggc
gagaccggctccggcaaaaccacccagatcccccagtacctgcacgaggaggggtacacg
cggggagggctgaagatcggcatcacccaaccgcgccgcgtggccgccatgagcgtcgcc
gcccgcgtggccgtggagatgggaaccaaactgggcaacgaggtggggtacagcatccgc
ttcgaggactgcacgtcggagcggacgctgctcaagtacatgacggacgggatgctgctg
cgcgagttcctcaccgagcccgacctggcgtcctacagcgtggtgatggtggacgaggct
cacgagcggacgctgcacacggatgtgctcttcgggctcatcaaggacatcgcgcgcttc
cgcccggacctcaaagtggtggtggcttcggccacgttggacactcagcgcttctccgct
ttcttcgataacgctcccgtcttccgcatccccgggaggcgcttccccgtcgacatctac
tacaccaaagcgcccgaggccgattacctggaggcgtgtgtggtgtcggtgctgcagatc
cacctcacgcagcccccgggggacatcctcgtcttcctcaccggacaggaggagatcgag
gcgtgcgtggagctgctgcaggagcgctgccgccgcctgggctcgcggctgccggagctg
ttggtgttgcccatttacgccaatctgccctcggatatgcaggcgcgcatcttccagccc
accccgcccggcgcccgcaaggtggtggtggccaccaacatcgcggagacatcggtgacg
atcgatggcatcgtttacgtcctcgaccccgggttctgcaaacagaagagctacagcgcc
cgcaccggcatggagtccctcgtcgtcaccccctgctcgcgggcctcagcgaaccagcgg
gcgggccgggcgggacgagtggctccgggcaagtgtttccgcctctacacggcgtgggcc
ttccagcacgaactggaggagacgcccgtgcccgagatccaacgctccgacctcggctcc
ctcgtcctcctcctcaagagcctcgggatcaacgatctcatccactttgacttcttggac
cctccaccccatgagacgttggtgttggcgctggagcagctctacgcgctgggggccctc
aaccacctgggcgagctcaccacgttgggtcggcggatggcggagctgccggtggagccc
atgttggccaaaatgatcctcgcctccgagcagtacggttgtacggaggaagtgctgacg
gtggccgcgatgctctccgtcaacaacgccgtcttctaccgccccaaagacaaagtcctc
cacgcggacagcgctcgcgtgggcttccacctgcccggaggggaccacctcgtgctcctc
aacgtctacaaccagtgggtgctgagcggtcactcggtgcagtggtgctttgagcacttt
gtgcaggcgcgggcgctgcgccgagcgcgggacgtgcgggagcagctcgaggggctccgg
gagcgcgtggagctcgcgcccacctcctgcgcccccgactaccgccccctccgcaaggcc
atcaccgccgggttcttctaccacgcggcgcggctgacgcggggcgggtaccgcacggtg
aagcaccagcagacggtgttcatccaccccaacagctctctgttcgaggagcagccgcgc
tgggtgctctaccacgagctcgtcttcaccaccaaggagttcatgcgccaggtgatcgag
atcgagagcgcgtggctgctggaggtggcgccccattactatcaggccaaggagctcgag
gaccccaacgcccgcaagatgcccaagaaggtcggcaagagccgggaggagctgagctga
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