Cuculus canorus (common cuckoo): 128849621
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Entry
128849621 CDS
T08597
Symbol
DDX39B
Name
(RefSeq) spliceosome RNA helicase DDX39B
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
cuca
Cuculus canorus (common cuckoo)
Pathway
cuca03013
Nucleocytoplasmic transport
cuca03015
mRNA surveillance pathway
cuca03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cuca00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
128849621 (DDX39B)
09122 Translation
03013 Nucleocytoplasmic transport
128849621 (DDX39B)
03015 mRNA surveillance pathway
128849621 (DDX39B)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cuca03019
]
128849621 (DDX39B)
03041 Spliceosome [BR:
cuca03041
]
128849621 (DDX39B)
Enzymes [BR:
cuca01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
128849621 (DDX39B)
Messenger RNA biogenesis [BR:
cuca03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
128849621 (DDX39B)
Spliceosome [BR:
cuca03041
]
Complex C
Other components
EJC/TREX
128849621 (DDX39B)
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
128849621 (DDX39B)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
128849621
NCBI-ProteinID:
XP_053908018
LinkDB
All DBs
Position
31:complement(124413..136605)
Genome browser
AA seq
428 aa
AA seq
DB search
MAENDVDNELLDYEDDEVDNAAGGEGAEAPPKKDVKGSYVSIHSSGFRDFLLKPELLRAI
VDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMC
HTRELAFQISKEYERFSKYMPSVKVAVFFGGLSIKKDEEVLKKHCPHIVVGTPGRILALA
RNKSLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCR
KFMQDPMEIFVDDETKLTLHGLQQYYVKLKDNEKNRKLFDLLDVLEFNQVVIFVKSVQRC
IALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIAF
NYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQDRFEVNISELPDEIDI
SSYIEQTR
NT seq
1287 nt
NT seq
+upstream
nt +downstream
nt
atggcggagaacgacgtggacaacgaactcctcgactatgaggatgacgaggtggacaac
gcggcggggggcgagggggcggaggcgccgcccaagaaggacgtgaagggctcctacgtc
tccatccacagctccgggttccgcgatttccttcttaaacccgagctgctccgcgcgatc
gtggattgcggcttcgagcacccctcggaagtgcagcacgagtgcatcccgcaggccatc
ctgggtatggatgtgctgtgccaggccaaatccggcatgggcaaaaccgccgtcttcgtg
ctggccacgctgcagcagctcgagcccgtcacggggcaggtgtcggtgctggtgatgtgc
cacacgcgggagttggcgttccagatcagcaaagagtacgagcgcttctccaagtacatg
cccagcgtcaaggtggcggtgtttttcggggggctgtcgatcaagaaggatgaggaggtg
ctgaagaagcactgtccccacatcgtggtggggaccccgggccgcatcctggccctcgcc
cgcaacaagagcctcaacctcaagcacatcaagcacttcatcctggacgagtgcgacaag
atgctcgagcagctcgacatgcgccgggacgtccaggagattttccgcatgaccccacac
gaaaagcaggtcatgatgttcagcgccacgctcagcaaggaaatccgccccgtctgccgc
aaattcatgcaagacccgatggagatcttcgtggacgacgagacgaagctgacgctgcac
gggctgcagcaatattacgtgaagctgaaggacaacgagaagaaccgcaaactcttcgat
cttctcgacgtcctggagttcaaccaggttgtgatcttcgtgaagtcggtgcagcgctgc
atcgcgctggcgcagctcctggtggagcagaacttcccggccatcgccatccaccgcggg
atgccgcaggaggagcggctgtcacgataccagcagttcaaggacttccagcgccgcatc
ctggtggccaccaacctgttcgggcgcgggatggacatcgagcgcgtcaacatcgccttc
aactatgacatgcccgaggactccgacacctacctgcaccgggtggcgcgggcgggccgt
ttcggcaccaagggcttggccatcaccttcgtgtcggacgagaacgacgccaaaatcctc
aacgacgtccaggatcgttttgaggtgaacatcagtgaactgcccgacgagatcgacatc
tcctcctacattgaacagacccgataa
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