Cuculus canorus (common cuckoo): 128850102
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Entry
128850102 CDS
T08597
Symbol
RNF40
Name
(RefSeq) E3 ubiquitin-protein ligase BRE1B
KO
K10696
E3 ubiquitin-protein ligase BRE1 [EC:
2.3.2.27
]
Organism
cuca
Cuculus canorus (common cuckoo)
Brite
KEGG Orthology (KO) [BR:
cuca00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
cuca04121
]
128850102 (RNF40)
Enzymes [BR:
cuca01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
128850102 (RNF40)
Ubiquitin system [BR:
cuca04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
BRE1 proteins
128850102 (RNF40)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BRE1B
zf-C3HC4
zf-C3HC4_3
BRE1
zf-C3HC4_2
CC_Bre1
KASH_CCD
zf-RING_5
zf-rbx1
zf-RING_UBOX
zf-RING_2
SSTK-IP
Motif
Other DBs
NCBI-GeneID:
128850102
NCBI-ProteinID:
XP_053909051
LinkDB
All DBs
Position
38:complement(15412..56947)
Genome browser
AA seq
1016 aa
AA seq
DB search
MSGVKRGAGEGGGGPPEKRPPREEQPPPTTLIEPLRLGGISSTEEMDLKVLQFKNKKLAE
RLEQRQACEDELRERIEKLEKRQATDDATLLLVNRFWAQLDAEVQALLRRYEGEGGAPPA
PSPFPGDPPEPQPEGSDPLSDPLGDPEGTERREAWGPPLVGRLWGAAGSFVAALSPGAEA
EPRPTLAFAPRAVARLVEGLASAHRRAQDLGGRLAARGELSEPGRALLRELLRDHRRLHE
LSLQLHEKHHRAALELAELQDKATSAETKVLEMGTTLEGLQWDREKLRKRQQRLHRHLAE
ALEQLNSGSYGSGSSGGFQGGQITLSMQKFEMLNAELEGNQELANSRMAELEKLQQELQQ
AVRGHERLKVALRSLPEEAVKETLEYKVLQSQFSLLYHESLQVKTQLDEARALLLATKNS
HLRHIEHMESDELGVQKRLRTEVIQLEDTLAQVRKEYEMLRIEFEQNLAANEQAGPINRE
MRHLISSLQNHNHQLKGDVQRYKRKLREVQAEINKLRLQASGAPPTPGTAPPPPPPPTTT
SAPPEDPPPAGVSAAAPPISIKEEEGSAPPNPTPPEPKREAPPTPPEPPRRPIEEEETPT
TTAAAAIIPPPVAPPQPPPRIKEPPPPAPSRASRGGGGGGGERERPRERERPKGTPEEGK
KKDSEVLKQLRMELKKAQESQKEMKLLLDMYKSAPKEQRDKVQLMAAERKSKAEAEELRA
RARELEERERRESKKLADEEALRRLRQSEEQIEHLQRKLAATKQEEEALLSEMDVTGQAF
EDMQEQNLRLLQQLREKDDANFKLMSERIKANQIHKLLREEKDELAEQVLALKAQVDAQL
LVVQKLEEKERGLQSSLAAVEKELALRSQALELNKRKAVEAAQLAEDLRAQGEHVAGRLR
ELQGCAAENRAAKDKEALSLKRAQEELSRLRRKLEKQRKVEVYADADQILQEEIKEYRAR
LTCPCCNARKKDAVLTKCFHVFCFECVKSRYDTRQRKCPKCNAAFGAHDFHRVYIS
NT seq
3051 nt
NT seq
+upstream
nt +downstream
nt
atgtcgggggtgaagcggggggcgggcgagggcggggggggcccccccgagaagcgcccc
ccccgcgaggagcagccgccccccaccaccctcatcgaacccctgcgcctcggcggcatc
tcctccacggaggagatggacctgaaggttctgcagttcaagaacaagaagttggcggag
cggttggagcagcgccaggcgtgcgaagacgaactacgggagcgcatcgagaagctcgag
aagcgtcaggcgaccgacgacgccactctgctcctcgtcaaccgcttctgggcgcagctg
gatgcggaggttcaggctctgctgcgtcgctacgagggcgaagggggggctccccctgcc
ccctccccatttcctggggacccccccgaaccccaacccgagggatccgaccccctctcc
gacccactgggggaccccgagggaaccgaacggagggaagcctggggtcccccacttgtg
gggcggctgtggggcgccgccggctccttcgtggcggcgctgagccccggggccgaggcc
gagccgcgccccacgctcgccttcgccccacgcgccgtcgcccgtctcgtcgaggggttg
gcgtccgctcaccgccgcgcgcaggacttggggggccgcctcgccgccaggggggagctg
tcggagccgggacgggcgctgctccgggagctcctccgcgaccatcggcgccttcacgag
ctcagcctccaactgcacgagaagcaccaccgcgccgccctcgagttggcggaacttcag
gacaaagccacatcggccgaaaccaaagtcttggagatgggaacgactctggaggggctc
caatgggaccgcgagaaactgcgcaaacgccaacagcgcctccaccgccacttagcggag
gccctcgagcagctgaactcaggctcctacggctccggaagttccggagggttccagggg
ggacaaatcacactcagtatgcagaagtttgagatgctcaacgcggagctggaggggaac
caggaattggccaacagccgtatggccgagctggagaagctccagcaggagctccaacag
gccgtgcgcgggcacgagcgcctcaaggtggctttgcgttcgctgcccgaagaggccgtg
aaggagacgttggagtacaaagtccttcagtcgcagttctcgttgctctaccacgagagc
ctccaagtcaagacccaactggacgaggcccgagccctcctcttggccaccaagaacagc
cacttgaggcacatcgaacacatggagagcgacgaactgggggttcagaagcgcctccgg
acggaggtcattcagttggaggacactctggcgcaggtgcggaaggagtacgagatgctg
cgcatcgagttcgagcagaacctggcggccaacgagcaggcgggtcccatcaaccgggag
atgcgccacctcatctccagcctccagaaccacaaccaccaactcaaaggcgacgtccaa
cgctacaagcggaagctgcgggaggtccaggctgagatcaacaagctccgcctccaggcg
agtggggcccctcccaccccgggcactgcgccgccccctcctccccccccaaccaccacc
tctgccccccccgaagaccctccccccgcgggagtctcggccgcagctcctccgatctcc
attaaagaagaagaaggttccgctcctccaaatccaacccctccggaacctaaacgagag
gcgccccctacaccccccgaacccccccggcgccccattgaggaagaggagacccccact
accaccgccgccgccgccatcatcccccctccggttgcccctccgcaaccgcctcctcgc
atcaaagagccccccccgccggctccgtcgcgggcttcgagggggggaggcggtggcggc
ggcgaacgggagcgcccgcgggagcgcgaacgccccaaaggaacccccgaggaagggaag
aagaaggattcggaggtgctgaagcagctgaggatggagttgaagaaagcgcaggagagc
caaaaggagatgaagttgctgttggatatgtataaatcggcgccaaaagagcaacgggat
aaagtgcagctgatggcggccgagaggaaaagcaaagccgaggcggaggagctgcgggcg
cgggcgcgggagctggaggagagggagcgtcgggagagcaagaagttggcggacgaggag
gcgctgcggcgcctgcggcaaagcgaggagcagatcgagcacctgcagcgcaagctggct
gccaccaagcaggaggaggaggcgctgctgtcggagatggacgtgacgggtcaggccttc
gaggacatgcaggagcagaacctgcggctcctccagcagctgcgcgagaaggacgacgcc
aacttcaagctgatgtcggagaggatcaaagccaatcagatccacaaactcctccgggaa
gagaaggatgagttggccgagcaggtcctcgcccttaaagcccaggtggacgctcaactc
ttggtggttcagaagttggaggagaaggaacgtggactgcagagcagtttggccgctgtg
gagaaggagttggcgctgcgctctcaggcgctggagctcaacaagaggaaggcggtggag
gcggcgcagttggcggaggacctgcgggcgcagggcgagcacgtggcggggcggctgcgg
gagctgcagggctgcgccgccgagaaccgcgcggccaaggacaaagaggccctcagcctc
aagcgagcacaggaggagctgtcgcggctgcggcgcaaactggagaaacagcgcaaagtg
gaggtctacgctgacgccgatcagatcctacaggaggagatcaaagagtaccgcgcccgc
ctcacctgcccgtgctgcaacgcccgcaagaaggacgccgtcctcaccaagtgcttccac
gtcttctgcttcgagtgcgtcaaaagccgttacgacactcgacaacgcaaatgccccaaa
tgcaacgcggccttcggcgctcacgacttccaccgcgtctacatcagctga
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