Cuculus canorus (common cuckoo): 128850249
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Entry
128850249 CDS
T08597
Name
(RefSeq) chromodomain-helicase-DNA-binding protein 1-like isoform X1
KO
K11367
chromodomain-helicase-DNA-binding protein 1 [EC:5.6.2.-]
Organism
cuca
Cuculus canorus (common cuckoo)
Brite
KEGG Orthology (KO) [BR:
cuca00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cuca03021
]
128850249
03036 Chromosome and associated proteins [BR:
cuca03036
]
128850249
Transcription machinery [BR:
cuca03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
SAGA/TFTC/STAGA complex
128850249
Chromosome and associated proteins [BR:
cuca03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
SAGA complex
128850249
SLIK complex
128850249
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
HTH_CHD1_Hrp3
CDH1_2_SANT_HL1
CHD1-like_C
Helicase_C
Chromo
Motif
Other DBs
NCBI-GeneID:
128850249
NCBI-ProteinID:
XP_053909219
LinkDB
All DBs
Position
W:complement(12743083..12803298)
Genome browser
AA seq
1798 aa
AA seq
DB search
MNGHSDEDVVRNSSGESSQSDDDSESASASGSGSSSGSSSDGSSSQSGSSDSESGSESDS
QSESVSDTSREKKQVQAKPPPKVDGSEFWKSSPSILAVQRSVLKKQQQQKSASSDSGSEE
DSSSSEDSADDSSSETRKKKHRDEDWQMSGSGSVSGTCSDSESEEDGEKNSCEDSESDYE
PKNKVKSWKPPSRVEPKSSKKTAGQKKRQLDSSDDDDCDKRGSRRQATVNVSYKEAEETK
TDSDDLLEVCGEDVPQPEEDEFETIEKFMDSRIGRKGATGAATTIYAVEADGDPNTGFEK
SKELGEVQYLIKWKGWSHIHNTWETEETLKQQNVKGMKKLDNYKKKDQETKRWLKNASPE
DVEYYNCQQELTDDLHKQYQIVERIIAHSNQKSAAGYPDYYCKWQGLPYSECSWEDGALI
AKKFQSCIDEYFSRNQSKTTPFKDCKILKQRPRFVALKKQPSYIGGHESLELRDYQLSGL
NWLAHSWCKGNSCILADEMGLGKTIQTISFLNYLFHEHQLYGPFLLVVPLSTLTSWQREI
QTWAPQMNAVVYLGDITSRNMIRTHEWMHPQTKRLKFNILLTTYEILLKDKSFLGGLNWV
FIGVDEAHRLKNDDSLLYKTLIDFKSNHRLLITGTPLQNSLKELWSLLHFIMPEKFSSWE
DFEEEHGKGREFGYASLHKELEPFLLRRVKKDVEKSLPAKVEQILRVEMSALQKQYYKWI
LTRNYKALSKGSKGSTSGFLNIMMELKKCCNHCYLIKPPDDNEFYNKQEALQHLIRSSGK
LILLDKLLIRLRERGNRVLIFSQMVRMLDILAEYLKYRQFPFQRLDGSIKGELRKQALDH
FNAEGSEDFCFLLSTRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRIGQKKQVNI
YRLVTKGSVEEDILERAKKKMVLDHLVIQRMDTTGKTVLHTGSTPSSSTPFNKEELSAIL
KFGAEELFKEPEGEEEEPQEMDIDEILKRAETRENEPGPLTVGDELLSQFKVANFSNMDE
DDIELEPEQNLRNWEEIIPEVQRQRIEEEERQKELEEIYMLPRMRNCAKQISFNGSEGKR
SRRSYSGSDSDSISERKRPKKRGRPRTIPRENIKGFSDAEIRRFIKSYKKFGGPLERLDA
IARDAELVDKSETDLRRLGELVHNGCSKALRDNSFGQERAGGRLGKVKGPTFRISGVQVN
AKLVISHEEELEPLHKSIPSDPEERKRYVIPCHTKAAHFDIDWGKEDDSNLLIGIYEYGY
GSWEMIKMDPDLSLTQKILPDDPDKKPQAKQLQTRADYLIKLLNKDLTRKEAQRHTGAGN
SKRKKTRTKKNKVTKAAKIKEEIKSDSSSPPSEKSDEDYEDNEDEIVSVKLPQKKIKADK
ENEEKLESDIGIKKEAEEKRETKEKENKRDLKREKKEKEDKKEIKNIKEKRENKVKESAQ
KEKEVKEEKVNEVKSENKEKNKKVSLLDIPVHITATSEPVPISEESEELDQKTFSVCKER
MRPVKAALKQLDRPEKGLSEREQLEHTRQCLIKIGDHITECLKDYTNPEQIKQWRKNLWI
FVSKFTEFDARKLHKLYKHAIKKRQEYQQHCDQNISSNMSTHVIRNPDVERLKENTNHDD
SNRDSYSSDRHLSQYHDHHKDRHQGDAYKKSDSRKRSYSAFSNGKDHRDWDHYKQDSRYY
SDSKHRKLDDHRSRDHRSILEGSLKDSWPHSDHRSHSDHRIHSDHRFTSEYSHHKSSRDY
RYHSDWQMDHRASGSGPKSPLDQRSPYGSRSPLGHRSPFEPSSDHKSTPEHTWSSRKT
NT seq
5397 nt
NT seq
+upstream
nt +downstream
nt
atgaatgggcacagtgatgaagacgttgtaagaaacagtagtggagagtcaagccaatca
gatgatgattctgagtcggcatcagcttctggatctggttcaagctctggaagcagtagt
gatggaagtagcagtcaatcaggtagcagtgactctgagtctggttcagagtcagacagt
caatcagaatcagtgtctgacacatctagagagaagaaacaagttcaagctaaaccaccg
ccaaaagttgatggatctgagttttggaagtccagtccaagtatacttgctgtgcagaga
tcagtgctcaagaagcaacaacagcagaagtcggcctcatcagacagtggttcagaagag
gattcgtcgagcagtgaagattctgcagatgactcttccagtgaaaccaggaagaaaaaa
cacagagatgaagactggcaaatgtctgggtcagggtcagtatcaggaacttgttctgat
tctgaatcagaggaagatggagaaaaaaacagttgtgaagatagcgaatctgactatgag
ccaaaaaacaaggtcaaaagctggaaacctccaagcagagttgagccaaaaagcagcaaa
aagactgcaggacagaaaaagaggcaacttgattcatcggatgatgatgactgtgacaag
agaggatctcgtcgccaggcaacagtcaacgtcagttacaaagaagctgaagaaaccaag
acagattctgatgacttgttggaagtttgtggagaagatgtcccgcagcctgaagaagat
gaatttgaaactatagagaagtttatggacagtcgaattggccgaaaaggagccactggt
gctgcaaccaccatctatgcagttgaggcagatggtgacccaaatactggatttgaaaag
tcaaaggagttaggagaagtacagtatcttattaaatggaaaggctggtcacatatccat
aatacttgggaaactgaggaaacactgaagcaacaaaatgttaaaggaatgaagaaactg
gacaactataagaaaaaggatcaggaaacaaaacgctggctgaaaaatgcttctccggaa
gatgtggaatattataactgccagcaggaacttacagatgatctacataagcagtatcaa
atagtggaaaggataattgctcattcaaatcagaaatcggcagctggttatccagattac
tattgcaaatggcagggtctgccttactcagaatgtagctgggaagatggtgctctcatt
gccaaaaaatttcagtcatgtattgatgagtattttagcagaaatcaatccaagaccact
ccatttaaggactgcaagattctaaaacagaggccgaggtttgttgcactaaagaagcag
ccatcttatattggaggacatgagagtttagagttaagagattatcagttaagtggactg
aactggcttgctcactcatggtgcaaagggaatagttgtattcttgcagatgaaatgggt
ctgggtaaaacaatacaaacaatttcttttctgaactacctgtttcacgaacatcaactg
tatgggcctttcttgctagtcgtgccactttctaccttgacatcttggcaaagagagatt
caaacttgggctcctcagatgaatgctgtggtttatttaggagatataactagcagaaat
atgataagaactcatgaatggatgcatccacagaccaagcgattaaaatttaatatactt
ctaacaacttacgaaattttgctgaaggataagtcattccttggtggtctgaattgggta
tttataggagttgacgaagctcatcgtttaaaaaatgatgattcccttctgtacaagact
ttaatagactttaagtctaatcatcgtcttcttattactggaactcccctgcaaaactcc
ctcaaagagctttggtctttgctgcacttcatcatgccagaaaaattttcttcttgggaa
gattttgaagaggagcatggcaaagggagagagtttggttatgcaagtcttcacaaagaa
cttgaaccatttctactcagaagagttaaaaaagatgtggaaaagtctttacctgctaag
gttgaacaaattttgagggtggaaatgagtgcattgcagaagcaatattacaagtggatt
ttaaccaggaattataaagccctgagtaaaggttcaaaaggcagtacctcaggcttcttg
aacataatgatggaactcaagaaatgttgtaaccattgctacctcattaaaccaccggat
gataatgaattctataataaacaggaggccttacagcatttaatacgtagcagcgggaaa
ctaattcttcttgacaagctactgattcgtctacgagaacgtggcaacagagtactgatt
ttctctcagatggtgaggatgctagacatcctggcagagtatttaaagtatcgtcagttt
ccctttcagagacttgatggatcaataaaaggagaattgaggaaacaagccctggatcat
ttcaatgcagaaggatcagaggacttctgctttttgctgtctaccagagctggaggatta
ggtataaacttggcatctgctgacactgtagttatatttgattccgactggaatccacaa
aatgatctgcaagcgcaggctagagctcataggattggacagaagaaacaggttaatatt
tatcggcttgtcacaaaaggatcagtagaagaggatattcttgaaagagccaagaaaaag
atggtgttggatcacttagtaattcagagaatggacactacagggaaaactgtactacac
acaggctctactccttccagctcaacaccttttaataaggaagagttatcagcaattttg
aagtttggtgctgaggaactttttaaagaacctgaaggggaagaagaggagcctcaggaa
atggatatagatgaaatcctgaagagggctgaaactcgagaaaatgagccaggcccacta
actgtaggagatgagttgctttcacagttcaaggtggctaacttttctaatatggatgaa
gatgacattgaattggaaccagaacaaaatttaagaaactgggaagaaatcattccagaa
gtccagcggcaacgaatagaagaagaggaaagacaaaaagagcttgaagaaatatatatg
ctcccaaggatgagaaactgtgcaaaacagatcagctttaatggaagtgaagggaaacgc
agtaggaggagctattctggatctgatagtgactccatctcagaaagaaaacgaccaaaa
aaacgtggacgaccacgaactattcctcgagaaaatattaaaggatttagcgatgcagag
attaggcggtttatcaagagttacaagaaatttggtggtccacttgaaaggttagatgct
atagctagagatgctgagctagttgataaatctgagacggaccttagacgtctaggagaa
cttgtacataatggatgcagtaaggctttaagggacaattcctttggacaagaaagagca
ggaggtagacttgggaaagttaaaggcccaacattccgaatatcgggagtgcaggtgaat
gcaaagctagtcatctctcatgaagaagagttggaaccattgcacaaatccattccttca
gatccagaagaaaggaaaagatatgtcatcccatgccataccaaggcagctcattttgat
atagattggggtaaggaagatgattccaatctattaataggtatctatgaatatggctat
ggcagctgggaaatgataaaaatggatcctgatctcagtttgacacagaagattttacct
gatgatccagataagaaaccccaggccaagcagttacagacccgtgcagattacctcatt
aaattactgaataaagaccttacaaggaaagaagcacaaagacatactggtgcaggcaat
tcaaagaggaagaaaacaagaactaagaagaacaaagtaacaaaggctgcaaaaattaaa
gaagaaataaaaagtgactcctcatcgccaccctcagaaaaatccgatgaagactatgag
gataatgaggatgagattgtttcagtgaaacttccacaaaaaaaaataaaagcagataaa
gaaaatgaagaaaagcttgagtcagatattggtataaagaaggaagctgaagaaaaaaga
gagacaaaagaaaaggaaaataagagggatttgaaaagggagaaaaaagaaaaagaggat
aagaaagaaataaagaatattaaagaaaagagagaaaacaaagtaaaagaatccgcacag
aaagaaaaagaagtaaaggaagaaaaggtaaatgaagtcaaatctgaaaataaagaaaaa
aataaaaaagtttcattgttggatattccagttcatattactgcaactagtgaaccagtt
cctatatctgaagaatctgaagaactggatcagaagacattcagtgtgtgcaaagaaaga
atgaggcctgttaaagcagcattgaaacaactggatagaccagagaaaggcctttctgaa
agggagcagctggagcatactagacagtgcctaatcaaaattggggaccatattactgaa
tgtctaaaggactacacaaatcctgaacaaattaaacagtggagaaaaaacttgtggatt
tttgtctccaagtttacagaatttgatgccagaaagctgcacaagttgtataagcatgca
atcaaaaaacgccaagaatatcagcaacactgtgaccagaatattagcagcaacatgagt
acacatgtaattagaaatccagatgttgaaagactgaaagagaatacaaaccatgatgac
agtaatagggacagttattcttctgatagacatttgtcacaataccatgatcatcataag
gacaggcatcagggagatgcttataagaaaagtgactctaggaaaaggtcctattcagct
ttcagcaatggaaaagaccacagagactgggatcactataaacaagacagcagatactat
agtgatagtaaacatagaaagttggatgaccacaggagcagagaccacaggtcaatcctg
gaaggaagtttaaaagacagttggcctcactcagatcaccgttcccactcagaccacagg
atacattcagatcaccgtttcacttcagagtacagccatcataaatcttctagagattat
aggtaccactcagactggcaaatggaccacagagcttctggtagtggcccaaagtcacca
ttagatcagaggtctccttatggttcaagatctcctttaggacacagatctccatttgaa
ccttcatcagatcacaaaagtacacctgaacatacatggagtagccggaaaacataa
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integrated database retrieval system
