Cheilinus undulatus (humphead wrasse): 121503674
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Entry
121503674 CDS
T07473
Symbol
xab2
Name
(RefSeq) pre-mRNA-splicing factor SYF1
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
cud
Cheilinus undulatus (humphead wrasse)
Pathway
cud03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cud00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
121503674 (xab2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cud03019
]
121503674 (xab2)
03041 Spliceosome [BR:
cud03041
]
121503674 (xab2)
Messenger RNA biogenesis [BR:
cud03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
121503674 (xab2)
Spliceosome [BR:
cud03041
]
Complex B
Other components
Prp19-related factors
121503674 (xab2)
Complex C
121503674 (xab2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_C
HAT_PRP39_N
TPR_14
Suf
TPR_2
TPR_19
TPR_12
TPR_8
TPR_15
ARM_TT21_C
TPR_16
ARM_TT21
TPR_MalT
SNAP
NRDE-2
Tcf25
LTN1_E3_ligase_6th
TPR_1
Motif
Other DBs
NCBI-GeneID:
121503674
NCBI-ProteinID:
XP_041634126
LinkDB
All DBs
Position
21:complement(26956673..26967665)
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AA seq
850 aa
AA seq
DB search
MPSLNGKPDVMFDDDDLPYEEEIIRNPYSVKCWMRYIEFKQNGSKATLNMIYERALKELP
GSYKLWYNYLRERRKQVKGKCITEPVYEEINNCHERALVFMHKMPRIWLDYCQFLVGQCK
ITRSRQTFDRALRALPVTQHPRIWPLYLRFVRNLPLPETAIRVYRRYLKLSPENAEEYID
YLRSVGRLDEAAVRLAAVVNDESFVSKEGKSNYQLWHELCDLISQNPDKVTSLNVGAIIR
GGLTRFTDQLGKLWCSLADYYIRSGHFEKARDVYEEAILTVVTVRDFTQVFDSYAQFEES
MIAAKMETTSEMGQDEDDDIDLELRLARFEQLIARRPLLLNSVLLRQNPHNVHEWHKRVK
LYEGNPRQIINTYTEAVQTVDPMKATGKPHSLWVSFAKFYEENDQLDDARTIFEKATKVN
YKQVDDLAAVWCEYGEMELRHENYDQALRILRKATAIPSKKAEYFDASEPVQNRVYKSLK
VWSMLADLEESLGTFQSTKAVYDRIIDLRIATPQIIINYAMFLEEHNYFEESFKAYERGI
ALFKWPNVYDIWNTYLTKFIDRYGGKKLERARDLFEQALDGCPAKFAKTIYLLYAKLEEG
YGLARHAMAVYERATQAVETEEQHHMFNIYIKRAAEIYGVTYTRAIYQKAIEVLPDEHAR
EMCLRFADMESKLGEIDRARAIYSYCSQICDPRVTANFWQTWKEFEIRHGNEDTIREMLR
IKRSVQATYNTQVNFMSSQMLKATTSSTGTVSDLAPGQMGIDDMKMLEQKAQQLAAEAEQ
DKPKPKEKILFVRSDTSRSELAELSKKANPDEIDIDDDDEDEDDEDQGPDEVQLEQKSVP
TAVFGGLKDD
NT seq
2553 nt
NT seq
+upstream
nt +downstream
nt
atgccttcactaaacggaaaaccagatgttatgtttgatgatgatgatctgccttacgaa
gaggagattatcaggaacccctactccgtcaagtgctggatgcgttacattgaattcaaa
cagaatggatctaaagctactctcaatatgatttatgagcgggcgttgaaagaattgcct
ggcagctataagctgtggtacaattatctgagagagaggcgcaaacaagtcaaaggaaag
tgtatcactgagccagtctacgaagagatcaataattgccatgaaagggcactggtgttc
atgcacaagatgccgagaatatggcttgattactgccagtttcttgtgggtcagtgcaag
atcacaagaagtcgacaaacatttgaccgtgctctcagagctcttcctgttactcagcac
ccacgcatctggccactgtatcttcgctttgtccgcaacctgccactgccagagacagcc
attagagtgtaccgcaggtaccttaagctgtctccagagaatgcagaggaatacatagac
tacttaaggtctgttggccgcttggatgaagcagctgtgcgactagcagctgttgtgaat
gacgaaagctttgtgtctaaagagggcaagtccaactaccaactgtggcatgagctatgt
gacctgatctctcagaaccctgataaggtgacgtcactgaatgttggagccatcatccga
ggaggcctcacacgctttacagaccaacttggaaaactctggtgctctttggcagattat
tacatcaggagtggtcactttgagaaggcccgcgatgtgtatgaggaggccatcctaact
gtagtaacagtgagggacttcacacaggtgtttgacagttatgctcagtttgaagagagc
atgattgcagcaaagatggagaccacttctgagatgggacaggatgaagatgatgacatt
gaccttgagcttaggctagcccgctttgaacagctgatagcccggcggcctctccttttg
aacagtgtactcctgaggcagaaccctcacaatgttcatgagtggcacaagcgagtaaaa
ctctatgagggcaatccacggcagataatcaacacctacactgaggcagtacagactgtg
gatcccatgaaggcaacagggaagcctcactctctttgggtttcatttgctaaattttat
gaggaaaatgatcaactggatgatgcaagaacaatttttgagaaggctacaaaggtgaac
tacaagcaggttgatgaccttgcagcagtttggtgtgaatatggagagatggagcttcgt
catgaaaattatgatcaagctctgcgcattttaaggaaagctacagccatcccgtccaag
aaagctgagtacttcgatgcctctgaaccagtccagaacagagtctacaagtccttgaaa
gtctggtctatgcttgcagacttggaggagagtcttggcacttttcagtctacgaaagct
gtttatgaccgcattattgatctccgcattgccacgccacagatcatcatcaattatgcc
atgttccttgaagagcacaactattttgaggaaagcttcaaagcatatgagcgtggtatt
gctctcttcaagtggccaaatgtttatgacatctggaacacttatctcaccaagttcatt
gatcgctatgggggcaagaagctggaaagagctagagatttatttgaacaagccttggat
ggctgccctgccaagtttgccaagaccatttatctgttgtatgcaaaattggaggaggga
tatggattggcacgacatgccatggctgtctatgaaagagcaacacaggctgtagaaact
gaggagcagcatcacatgttcaacatttacatcaagagagcagctgaaatttacggggtc
acatatacaagagcaatttaccagaaagctattgaggtccttcctgatgagcatgcaagg
gaaatgtgtctgcgatttgctgacatggagagtaaattgggtgagattgatcgggccaga
gcaatctattcctattgctcccagatctgtgaccccagggtgacagccaatttctggcag
acctggaaagaatttgagatccgccatggaaatgaggacactattagagaaatgctgcga
atcaaacgcagcgtccaggccacatacaacacccaggtcaactttatgtcctctcagatg
ttgaaagccacaacaagctccacaggaactgtgtcagatcttgctccagggcaaatggga
atagatgatatgaagatgttggaacagaaagcacagcagcttgctgcagaggctgaacag
gataaacccaagcccaaagagaagatcctgttcgtcaggagcgacacctctcgcagtgag
ttggctgaactttccaaaaaggccaatcctgatgaaatcgacatagatgatgatgacgag
gatgaggatgatgaagaccaggggccggatgaggttcaacttgaacagaagagtgtcccc
acagctgtctttgggggtcttaaagatgactga
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