Cheilinus undulatus (humphead wrasse): 121503881
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Entry
121503881 CDS
T07473
Symbol
ddx42
Name
(RefSeq) ATP-dependent RNA helicase DDX42 isoform X1
KO
K12835
ATP-dependent RNA helicase DDX42 [EC:
5.6.2.7
]
Organism
cud
Cheilinus undulatus (humphead wrasse)
Pathway
cud03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cud00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
121503881 (ddx42)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cud03041
]
121503881 (ddx42)
Enzymes [BR:
cud01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
121503881 (ddx42)
Spliceosome [BR:
cud03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
121503881 (ddx42)
Complex B
121503881 (ddx42)
Complex C
U2 SnRNP specific factors
121503881 (ddx42)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
ERCC3_RAD25_C
Motif
Other DBs
NCBI-GeneID:
121503881
NCBI-ProteinID:
XP_041634393
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All DBs
Position
21:complement(15149650..15162659)
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AA seq
910 aa
AA seq
DB search
MNWNKGGPGVKRGFGFGGFSLAGKKEEPQLPQKSHTSFGASGSGGGYGKNQQLPSFYKIG
TKRANFDEENAYFEDDEEESSSNMDLPYIPAENSPTRQQMQSGGGSDSEDDPLDAFMAEV
ESQAAKDMRKLEEKEKEKKSAKGIRDDIEEEDEQEAYFRYMAENPTAGLTQEEEEENVDY
DSDGNPIAPTTKKIILPLPPIDHSEIDYPPFEKNFYNEHEELGNLTATQVLELRHKLNLR
VSGAAPPKPCTSFAHFGFDEQLMHQIRKSEYTQPTPIQCQGVPIALSGRDMIGIAKTGSG
KTAAFIWPMLVHIMDQKELEAGEGPIAIIVCPTRELCQQIHAECKRFGKAYSLRSVAVYG
GGSMWEQAKALQDGAEIVVCTPGRLIDHVKKKATSLQRVTYLVFDEADRMFDMGFEYQVR
SVASHVRPDRQTLLFSATFRKKIERLARDILVDPIRVVQGDIGEANEDVTQVVELLPLGS
DKWPWLTKRLVEFTSAGSVLIFVTKKANCEELATNLNQEGYSLGLLHGDMDQSERNKVIT
DFKKKNLPILVATDVAARGLDIPSIRTVVNYDVARDIDTHTHRIGRTGRAGEKGVAYTLL
TNKDTSFAGDLVRNLEGANQSVSKELMDLAMQNPWFRKSRFKGGKGKKLNIGGGGLGYRE
RPGLGAESSERGSGSSLLSSSGGYEGFTKTTTGAMGDRMSAMKQAFQAQYKSHFVAASSG
PPKLSTKSSSSSGWTSAGSLSSVPTEAANGSDRPQGITLSLASFTSAGSLSSVPPSQTSS
QQSYPPPAPPSQRDSSRDRHSEDRGRDSYHRHSDRSDRHSGEDRYGERDRHGDRDRDRHS
DRDRYSSSSRHSDSRNGDGSRRERDDRRSERDWGDRGSGEGRDRDRERDRGDDSFAVPEP
PKRRKSRWDN
NT seq
2733 nt
NT seq
+upstream
nt +downstream
nt
atgaactggaacaaaggcggccctggtgtgaagcgaggttttggattcggaggattctcc
cttgctgggaaaaaagaggagcctcagcttcctcaaaaatctcatacttcatttggagcc
tcaggatcaggcggaggctatgggaagaaccagcagctcccatcattctacaaaataggg
acaaaaagagccaattttgatgaggaaaatgcttactttgaagacgatgaggaggagtcc
agcagcaatatggacctgccatacatcccagctgagaactctccaacacggcagcaaatg
cagtctggtggtggctcagatagcgaagatgatcctctcgatgctttcatggcagaggtt
gagagccaggcagctaaagacatgaggaaactggaggaaaaggaaaaggagaaaaagtca
gccaagggtattcgcgatgacattgaagaggaagatgaacaagaagcctacttccgctac
atggcagagaatcccacagctgggctgacccaagaagaagaggaggaaaatgtcgactat
gacagtgacgggaacccgatcgctcctaccaccaagaaaataatcttaccacttcctccc
attgaccactctgagattgattacccaccattcgagaaaaacttctacaatgaacatgag
gagctcggcaacctgacagcgacacaagtgttggagttacggcacaaactgaacctgagg
gtgtctggtgctgcccctcctaaaccttgtactagttttgcccactttggctttgatgaa
cagctgatgcatcaaatccgcaagtctgagtacactcagcccacaccgattcagtgccag
ggtgtgccgatagctctatcaggacgagacatgattggtatagcgaaaactggcagtggc
aaaacagcagcatttatctggcccatgctggttcacatcatggaccaaaaggaactggag
gcaggagaagggcccatcgctatcattgtgtgtcccacgagagagctttgtcagcagatc
catgcagaatgtaagcgttttggtaaagcctactcactgcgttctgtggctgtgtatgga
ggaggcagcatgtgggagcaggccaaagctcttcaggatggagcagagattgtggtgtgc
acaccgggtcgtctgattgatcacgtcaaaaagaaggccacgtccctgcagagagtgaca
tacctggtgtttgatgaagcagatcgcatgtttgatatgggctttgaataccaggtcaga
tccgttgctagccacgtacgcccagacagacagactcttctttttagcgctactttccga
aagaagatagagaggctggccagagacatcctggtagacccgatccgtgtggtgcaggga
gacatcggagaggccaatgaggatgtgacccaggtggtggagctgctacctttggggtcg
gacaaatggccttggctgaccaagcggctcgttgagttcacttcagccggctctgtcctg
atcttcgtcaccaaaaaggcaaactgtgaggagctggctaccaacctcaatcaggaaggt
tacagtctgggccttctgcatggagacatggaccagagtgagaggaacaaagtcatcacc
gacttcaagaagaagaatctgcccattctggtggccactgatgtagctgctcgtggtctg
gatatcccatccattcgcactgtggtgaactacgatgtggcacgagacatcgacacgcac
acgcacaggatcggtcgaactggtcgtgctggagagaagggtgtagcttacactctcctc
accaacaaagacacgtcattcgccggcgaccttgtgagaaatctagagggagcaaatcaa
agtgtttccaaagaactcatggacctggctatgcagaatccttggttcaggaaatcccgc
ttcaaaggtgggaaaggaaagaagctgaatatcggtggtggtggtcttggctacagagag
aggccaggtctgggggctgaaagttctgaacgtggcagtggcagcagtttgttgtcctct
tctggcggctatgaaggcttcaccaaaacaaccacaggagcaatgggagatcggatgtct
gccatgaaacaagcctttcaggcccagtataagagtcactttgtggctgcatccagcggc
cctccaaagctcagcaccaagtccagcagctcatccggctggaccagtgctggcagcttg
agctctgttccaactgaggccgccaatggttccgaccggccccagggcatcaccctgtct
ttggccagtttcaccagcgccggctctctgagctcagtgcctcccagtcaaaccagttct
cagcagagctacccccctccagctcctccctcacagagagatagctcacgggacagacac
agtgaggaccggggccgcgacagctaccaccgccacagcgacaggagcgatagacacagc
ggagaggatcgctatggagagcgcgatcggcatggagacagagatcgggaccgccacagc
gaccgagatcgctacagcagcagcagccgtcacagtgatagtcgtaatggagatggaagc
aggagggagagagatgatcggaggagtgagagggactggggagacagggggagcggggag
gggagggacagagacagagaaagagacagaggagatgacagctttgctgtccctgaaccg
ccaaaacgtagaaagagcaggtgggacaactaa
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