Cheilinus undulatus (humphead wrasse): 121504507
Help
Entry
121504507 CDS
T07473
Symbol
col4a5
Name
(RefSeq) collagen alpha-5(IV) chain isoform X1
KO
K06237
collagen type IV alpha
Organism
cud
Cheilinus undulatus (humphead wrasse)
Pathway
cud04382
Cornified envelope formation
cud04510
Focal adhesion
cud04512
ECM-receptor interaction
cud04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
cud00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
121504507 (col4a5)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
121504507 (col4a5)
09142 Cell motility
04820 Cytoskeleton in muscle cells
121504507 (col4a5)
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
121504507 (col4a5)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
cud04147
]
121504507 (col4a5)
00536 Glycosaminoglycan binding proteins [BR:
cud00536
]
121504507 (col4a5)
Exosome [BR:
cud04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
121504507 (col4a5)
Glycosaminoglycan binding proteins [BR:
cud00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
121504507 (col4a5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
121504507
NCBI-ProteinID:
XP_041635253
LinkDB
All DBs
Position
22:complement(28887900..28968081)
Genome browser
AA seq
1687 aa
AA seq
DB search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NT seq
5064 nt
NT seq
+upstream
nt +downstream
nt
atgaataaagacttgaagagcctgcgacagctcgccgtgcctctgctcgtcctcgctctg
tgcgtcgcggtgcagcaggcagactccgcggcgtgccatggctgtgtgggatccaaatgt
gactgcagtggacaaaaaggagccaagggtgaacggggtttcccaggcctcaccggacag
ccaggagtcccaggattcccaggacctgagggacccattggacccagaggagagaagggt
agcgatggacctcaaggactgtctggtccaaaaggaataagagggccgcctgggttgccg
ggatttcccggaactccaggacttccaggtctccctggacaggatggacctccaggacca
aggggagtaccgggctgcaacgggacaaagggtgaaagaggttacccaggaagtggaggc
atccctggagcacagggactaccgggtccacctggtctgcctggaccaaagggagacccc
ggtgacgtggtctccacaaaccgttttggagagaaaggagctgttggactgcccgggtta
ccaggaaatcctggcacccctggaccccctggtttacaaggtccactcggcccaccggga
cccagaggctacgagggtcgtccaggtcctccaggtcctcctggaccaaagggaaatatg
gggttgaacttccagggacccaaaggagaaaagggtgaacccggcttgccaggacctccc
ggacctcccggacaggtgggagagcagaagagaccaccagagacagagatccagagagga
gacaagggtgatccaggtcctcaaggtcctccaggagatccaggctatccaggaccccct
ggtccttctggtggacagaaaggagaaaagggagaacctggagaggccggcaaacgaggc
aaaaacggcaaagatggcgaccctggtactccaggtttcccaggaatcaaaggagagcca
ggacttccaggtcctccaggcagggacggagagagaggcctaaaaggtgaccgtggatac
ccaggtcctccaggagcggtgattggtgggcagaccggtggaattggtcctaaaggtgag
ccgggattcccaggatcacctggactcaaaggagaaagaggaccacaaggtctaacagga
ccaccaggagctcctgggcttccagctatcggtggaggtggtcagcctggatctccaggt
ttccctggagagagaggtcaaaagggagaccaaggccctccaggtctgtcgttgcccgga
cccccaggtcgttcaggagccccaggtcctcagggtcaaccaggaccccctggacctcct
ggcttttcaacggcaggacaaaactgtgtcgcaggagatcctggacgccctggtctgcag
ggagagagaggttatccaggagagacaggacagaaaggtgagaagggcgacacctgtgtg
aactgctttggtggtaccagtaccatcccaggacccccaggacctccaggaccacctgga
ttccccggtgggcccggcggccctggttctaaaggagaccgaggattccctggtacacct
ggagctgttggacctcctggtccttctggtcccacaggagctccaggattccccggagag
aaaggagaccctggggaggcaatcacagtgagcggtgtgaggggagagaaaggtgatacc
ggcttccctggatcacctggtctacctggtcttgatggtcgtcctggtcgggatggaggt
cctggagctccaggacccaaaggagctcctggttccctgctggtgaaaggagaacgtgga
tcccctggtgagccaggttccccaggtattcccggagataggggccccccaggaggccct
gggtttggacctcagggcccctcaggagagaagggtatcccaggagtaccaggaagaccc
ggaggtccaggtgcaccaggagctaaaggtgaaccaggcctatcaatcgctgaaaagggc
ttaccaggacccagaggactggatggcgagccaggattgcctggtccttcaggtgcccct
ggtcagcctggtcgggatggtttccctggtttaccaggggcaaagggtgaaccaggactc
ccagggattggacttccaggaccagcaggagttaaaggattcccaggtattcctggccag
ccaggagctcctggagaaccaggcagaccaggcgttgatggactccccggccaacctgga
tttcctggacccaagggagaacctggctttgggctccctggcccaccaggtttacctgga
gtacccggaggcaaaggttttccaggaccaaagggagatccaggtttccctggtggtcct
ggttcacctggacgaaatggatttgatggtgctccaggagctaaaggtgagcctggttca
ccaggtattcctggagctcgtggcccacctggatctcccaccattggctcactgggtcca
cctggtccacctggcccacctggcccaatgggaccaccaggattctctggaggaaatgga
gggaagggagaccctggccctccaggtctagacatcccaggtctgccaggagacagagga
agtcctggtttcccaggttccccaggaccagttggtgccccaggacctccaggaggacct
ggaagggatggcgtgcctggactgcctggtcagaaaggagacatgggtcccatgggatct
ccaggaccttcaggaggacctggaggcccaggagggcctggcggacctggacaaaaaggt
gaatctggattcccgggtagagatggcacccctggtggtcctggtgctaagggagagaga
ggtgaaccaggtctccaggggcccccaggagccaccctaccaccatcagtcacaaaggga
gccaaaggagatcctggactaccaggttcaccaggtattccgggtcagaaaggtatccca
ggtctcccaggtgaccctggactgtcaggatcagatggacgccctggactccctggacca
ccaggccctaagggagaccctggtatcccaggaggcccaggtggtcctggaagccctgga
cttaaaggcggaatgggagaaatgggattcccaggaccagcagggcagaagggtctacca
ggtcagccaggtaggcctggatccccaggacagcctggaggtccaggattccctggttca
aagggtgaaccaggttccgctggtgtaggaccacctggaccatctggactgaagggtgaa
ccaggacagccagggttcccaggaagtccagggctgaaaggaactccaggagcgcccggt
gtcccaggtttaccaggagggctaggccctaagggagaccctggccttccaggattccaa
ggtgcacctggtatccccggtccaaagggtcttgatggtggacccggtgccccaggtctc
ccaggagctcccggtagaccaggagagcctggtcgaccaggaggaccaggttttcctgga
gaaaagggtcaagcaggtcgggacggaatcccaggaccagctggagtgaaaggagaaccc
ggtcttcctggttatggaggtcctggtcctactggtcttccagggttgccaggtgcaaag
ggtgacccaggtctccccggcccatctggcagtcctggtttccctggcaccaaaggagag
gctggtttccccggtgctccaggccctcctggcaacagtgggccacctggacctcctgga
gctgctttgcagggtcctaaaggaattcaaggaccacctggaccacctggaagagcaggt
cctaaaggtcctccaggtgcacctggcccagagggtccacgtgggcccccaggatcaggc
ggcatcagaggagagaagggcatccccggtgctccaggccagccaggcttccctggacag
aaaggagatcctggtgttcctggcttcccgggcccctctggtctccctggtgctcctggt
ataaagggagacattggccttcctggagttcctggattccctggacctaaaggtgaccct
ggactccctggtggtagtgggcttcctggagatcctggagatattggacccagtggccct
cctggtgaccctggtgtacctccagctcccatcgttgtgaaaggagagaggggaccccct
ggtcctcagggtctgaatggtgctcgagggccccctggttctcctggacgtgagggactt
ccaggccctgctggtgaacctggagatcctggtcttgagggtcctcctggcttcagtggt
ccacctggcaggaagggagacaacggaccagctggtcagcctggccagcgtggttaccct
ggtcctcctggttcagacggtcctcagggtcctcctggtcttccaggatcagtttctgct
gctcacggcttcctcatcacacgacacagccaaggtcaggatgttcctttctgtcctgag
gggacaactctcatctacgatggatactccctgctctacgttcagggcaacgagagagca
cacgggcaggacctcggcacggccggcagctgtctgcgcaggttcagcaccatgcccttc
atgttctgcaacatcaacaacgtctgtaacttcgcctctcgtaacgactactcctactgg
ctgtccacacctgagcccatgcccatgtccatggcgcccatcaccggcgagagcatcaag
ccttacatcagcaggtgttcagtttgtgaagctcctgctatggtgatcgcagtccacagt
cagaccatccagattccttcctgcccgtcgaactgggaagccctgtggatcggatactcc
ttcatgatgcacaccagcgcaggtgcagagggctccggtcaggctttggcctcccccggc
tcctgtcttgaggagttccgcagcgctcccttcatagagtgccatggcagagggacctgc
aactactacggcaactcctacagcttctggctggccactgtagagccctccgaaatgttc
aggaagccgcagtcagagactctgaaggcagggaacctacgaacacgcgtcagtcgctgc
gtagtctgcatgaagaggacgtaa
DBGET
integrated database retrieval system
