Cheilinus undulatus (humphead wrasse): 121505037
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Entry
121505037 CDS
T07473
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15-like isoform X1
KO
K12820
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43 [EC:
5.6.2.6
]
Organism
cud
Cheilinus undulatus (humphead wrasse)
Pathway
cud03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cud00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
121505037
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cud03041
]
121505037
03009 Ribosome biogenesis [BR:
cud03009
]
121505037
Enzymes [BR:
cud01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
121505037
Spliceosome [BR:
cud03041
]
Complex A
U2 snRNP components
U2 related factors
121505037
Complex B
121505037
Complex C
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-SnRNP related factors
121505037
Ribosome biogenesis [BR:
cud03009
]
Eukaryotic type
90S particles
Helicases
121505037
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
HA2_N
DEAD
AAA_22
AAA_19
SRP54
Flavi_DEAD
nSTAND3
ABC_tran
AAA_29
AAA_7
AAA_25
Motif
Other DBs
NCBI-GeneID:
121505037
NCBI-ProteinID:
XP_041636101
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All DBs
Position
22:17362135..17414689
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AA seq
732 aa
AA seq
DB search
MMRRDRNRERASDERWSDRDRDRAWGRDAKPFSPAGGSGGGFMKQTPLQQQINQFTNLPH
TPRYYEILKKRLQLPVWEYRESFTDTLTQNQSFVLVGETGSGKTTQIPQWCVDMVRAVPG
PKRAVACTQPRRVAAMSVAQRVADEMDVMLGQEVGYSIRFEDCSSAKTVLKYMTDGMLLR
EAMNDPLLERYGVIILDEAHERTLATDILMGVLKEVARQRLDLKVIVMSATLDAGKFQVY
FDSCPLLTIPGRTHPVEIFYTPEPERDYLEAAIRTVIQIHMCEAAEGDILLFLTGQEEID
EACKRIKREIDDLGPEVGDIKIIPLYSTLPPQQQQRIFEPPPPNKPNGAIGRKVVVSTNI
AETSLTIDGVVFVIDPGFAKQKVYNPRIRVESLLVTAISKASAQQRAGRAGRTRPGKCFR
LYTEKAYKTEMQDNTYPEILRSNLGSVVLQLKKLGIDDLVHFDFMDPPAPETLMRALELL
NYLAALNDDGDLTELGSMMAEFPLDPQLAKMVIASCEFNCSNEVLSITAMLSVPQCFVRP
TEVKKAADESKMRFAHIDGDHLTLLNVYHAFKQNHESTQWCYDNFVNYRSLMSADNVRQQ
LSRIMDRFSLPQRSTEFSSRDYYTNIRRALVTGFFMQVAHLERTGHYLTVKDNQVVQLHP
STVLDHKPEWVLYNEFVLTTKNYIRTCTDIKPEWLVKIAPQYYEMSNFPQCEAKRQLERI
IAKVSSKEHTQY
NT seq
2199 nt
NT seq
+upstream
nt +downstream
nt
atgatgaggcgtgaccgcaacagggaacgagccagtgatgaacgttggagtgacagggat
cgagatcgagcctggggcagagatgcaaagccattctcacctgcaggaggcagcggcggc
ggcttcatgaaacaaacccccctacagcagcagatcaaccaatttactaacctgccccac
acgccacgctactatgagatcctaaagaagcggttgcagcttcctgtctgggagtacaga
gagagctttactgataccctgacacagaaccagtcttttgtcctggtgggagagacgggc
tctggaaagaccacacagatcccccagtggtgtgtggacatggtgcgggcagtgccgggg
ccaaagagagcagtggcctgcacccagcccaggagggtagcggcgatgagtgtcgcccag
agggtggctgatgagatggacgtcatgctgggtcaagaggtgggctactccatcaggttt
gaggactgcagctccgccaagacggtactcaagtacatgacagatgggatgttgctgcgg
gaggccatgaatgatcctctgctggaacgttacggcgtcatcatcctagatgaggcacat
gaacgcacattagctacagatatcctcatgggggtgttgaaggaggtggcccgccagagg
cttgacttgaaggtcatcgttatgagcgccaccctcgatgccggaaagttccaggtgtac
tttgacagctgcccattgctcactatccctggacgcactcaccctgtggagattttttac
accccagaaccagagcgtgactacctggaggcggccatccggactgtgatccagatccac
atgtgtgaagcggctgaaggggacattctgctcttcctcactggacaagaggaaatcgat
gaagcttgcaagcgaatcaagagggagattgatgacctgggccctgaggtcggcgatatc
aaaatcatccccttgtactcgacgttgcctccacagcagcagcagaggattttcgagcct
cctccacccaataaaccaaatggcgccatcggaaggaaggttgtcgtgtcaacaaacatc
gccgagacgtccctgaccatcgacggcgtcgtgtttgtaattgatcccggatttgccaag
caaaaggtgtataacccacgcatcagagtggaatccctcttggtcacagcgatcagcaaa
gcctcagcccagcagagggcgggtcgcgctggacgaacacgcccaggaaagtgtttccgc
ctttacaccgagaaagcttacaagacagaaatgcaggacaacacgtatccagagatcctg
aggtccaatctgggctctgtggtgctgcagctgaagaaactgggaatagacgacttggtg
cactttgacttcatggacccaccagccccagagaccctgatgcgagccctggagttgctg
aactatctggcggcgctcaacgacgatggtgacctaacagagctgggttccatgatggcc
gagttccccctggaccctcagctggccaagatggtcatcgccagctgtgagttcaactgt
tccaacgaggttctctccatcacggccatgttgtcagtcccacagtgcttcgtccgacca
accgaggtgaagaaggcagcggatgagtccaagatgcgctttgcccacatcgacggagac
cacctgacgttgctcaacgtctaccatgcctttaaacagaaccacgagtccactcagtgg
tgctatgacaattttgtcaactaccgctcgctgatgtcagcagacaatgtgcggcagcag
ctttccaggatcatggaccgcttcagcctgccgcagcggagcacagagttctctagcaga
gattactacaccaacatccgcagagctctggtcactggattcttcatgcaggtcgctcac
ctggagcgcaccggtcattacctgacagtgaaggacaaccaagtggtgcagctgcacccc
tccactgtgctggaccacaagcctgagtgggtgctctacaacgagtttgtgctcaccacc
aagaactacatccgcacatgtactgacatcaaaccagagtggctcgtgaaaatcgccccg
cagtactacgagatgagtaacttcccccagtgtgaagcaaagagacagttggagcgcatc
attgcaaaagtctcatctaaggaacacactcagtactaa
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