Cheilinus undulatus (humphead wrasse): 121508372
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Entry
121508372 CDS
T07473
Name
(RefSeq) probable ATP-dependent RNA helicase DDX5
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
cud
Cheilinus undulatus (humphead wrasse)
Pathway
cud03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cud00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
121508372
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cud03041
]
121508372
03009 Ribosome biogenesis [BR:
cud03009
]
121508372
Enzymes [BR:
cud01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
121508372
Spliceosome [BR:
cud03041
]
Complex A
U1 snRNP components
U1 related factors
121508372
Complex B
121508372
Ribosome biogenesis [BR:
cud03009
]
Eukaryotic type
Pre-60S particles
Helicases
121508372
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Helicase_C_2
Cas3-like_C_2
ERCC3_RAD25_C
BNIP2
Motif
Other DBs
NCBI-GeneID:
121508372
NCBI-ProteinID:
XP_041641106
LinkDB
All DBs
Position
4:24661967..24672454
Genome browser
AA seq
634 aa
AA seq
DB search
MPGFSDRDRGRDRGYGGGPPRFGGGGGGNRGGPPPGKFGNPGERLRKKHWNLDELPKFQK
NFYQEHPDTSRRPLQEIEQYRRSKEVTVKGRDCPKPIIKFHEAAFPSYVMDIISKQNWTE
PTPIQSQGWPVALSGKDMVGIAQTGSGKTLAYLLPAIVHIQHQPFLEHGDGPICLVLAPT
RELAQQVQQVAAEYGRVSRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLECGK
TNLRRCTYLVLDEADRMLDMGFEPQIRKIVEQIRPDRQTLMWSATWPKEVRQLAEDFLKD
YVQINIGALQLSANHNILQIVDVCNDMEKEDKLIRLLEEIMSEKENKTIIFVETKRRCDE
LTRRMRRDGWPAMGIHGDKSQQERDWVLNEFRYGKAPILIATDVASRGLDVEDVKFVINY
DYPNSSEDYIHRIGRTARSQKTGTAYTFFTPNNMKQASDLISVLREANQAINPKLIQMAE
DRGGRGRGGRGGYKDDRRDRYSGGGRSGFGGSSYRDRDNDRGFGGGPKSAFGGNKAQNGG
NYGGNSGNSSGSYGSNNYNNSNGQGNFGAPPNQVSAFGNQSFQGPPQFGAMQRAAQNGMN
HPPFPFNSQPPPQGQQPPPPPPMVPYPMPPPFPQ
NT seq
1905 nt
NT seq
+upstream
nt +downstream
nt
atgcctggattttcagacagagatcgtggcagagacagagggtatggtggaggaccccct
cgttttggcggtggtggaggaggcaataggggtggacctcctcctggaaaatttggcaac
cctggagagagactgcgaaagaaacactggaacctcgatgaacttccaaagtttcagaag
aacttctaccaggaacatcctgatacctcccgaagaccacttcaagagattgaacagtac
cggagaagcaaagaggttactgttaaaggcagggattgccccaaaccaataataaaattc
catgaagctgcatttccaagctatgtcatggacatcataagcaaacaaaattggactgaa
ccaactcccattcagtctcaggggtggcctgttgccctaagtggcaaagacatggttggc
attgctcaaactgggtctgggaaaacccttgcataccttttgcctgctattgtgcacatc
cagcatcagccattcttggaacatggagatggaccaatttgcttggtgctggcaccaacc
cgggagctggctcagcaggtgcaacaagtggctgctgaatatgggagggtctcccgtctc
aagagtacctgcatctacggtggtgcacccaaaggaccccaaataagggaccttgagagg
ggtgttgagatttgcattgcaaccccgggtcgtctcattgacttcttggagtgtggcaag
accaatttgcgtcgttgtacctatctggtgctggatgaagctgaccgcatgctggacatg
ggctttgaacctcagatccgcaagatagtggaacaaattcggccagaccgtcagaccctg
atgtggagtgccacctggcctaaggaagttcgccagctggctgaagacttcctgaaggat
tacgtccagatcaacattggtgcactgcagcttagtgccaaccacaacatcctgcagatc
gtcgatgtttgcaatgacatggagaaggaagacaaattgatccgtttgctggaggagata
atgagcgaaaaagaaaacaaaaccatcattttcgtggagaccaaaaggcggtgtgatgag
cttactaggaggatgagaagagatggttggccagcaatgggaatccatggagacaagagc
cagcaggagagggactgggtccttaatgagttcaggtatggcaaagcaccgatcctcatc
gcgacagatgtggcctcccgtggcttagatgtggaggatgtgaaatttgtcatcaattat
gactaccctaactcctccgaggattatatccatcgcattggacgcacagcccgcagtcaa
aaaacgggcacagcctacaccttcttcacccccaacaacatgaaacaagccagcgacctg
atctctgtgctccgcgaggccaaccaggccattaaccccaaactgatccaaatggcagag
gacagaggaggtcgtggacgggggggaagaggtggctacaaggacgaccgtcgggatagg
tattctgggggtgggaggagcggctttggtggtagtagctacagggatagggacaatgat
agagggtttggcggtgggcccaaaagtgcctttggtggcaataaagcccaaaacggtggc
aactatgggggtaacagtggcaactctagtggtagctatggcagcaacaattataacaac
agcaatggacagggtaatttcggtgctccacctaaccaggtgagtgcctttggtaaccaa
agcttccaggggccccctcagttcggggccatgcagagggctgctcagaatggcatgaac
caccctccattcccgttcaactcacagccgccaccacagggccaacagccaccaccccct
ccaccaatggtgccctaccccatgccaccacccttcccacagtag
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