Cheilinus undulatus (humphead wrasse): 121508700
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Entry
121508700 CDS
T07473
Symbol
parn
Name
(RefSeq) poly(A)-specific ribonuclease PARN isoform X1
KO
K01148
poly(A)-specific ribonuclease [EC:
3.1.13.4
]
Organism
cud
Cheilinus undulatus (humphead wrasse)
Pathway
cud03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cud00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
121508700 (parn)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cud03019
]
121508700 (parn)
Enzymes [BR:
cud01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
121508700 (parn)
Messenger RNA biogenesis [BR:
cud03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
121508700 (parn)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CAF1
RNA_bind
R3H
RRM_Thc1
NCBP3
FMP23
Motif
Other DBs
NCBI-GeneID:
121508700
NCBI-ProteinID:
XP_041641653
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All DBs
Position
4:47297874..47317119
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AA seq
684 aa
AA seq
DB search
MEVTRRNFKDCLNAVYSAINEADFLAIDGEFSGISDGPNVSALTNGLDTPEERYTKLKKH
SMDFLLFQFGLCTFKYDQAKSKYITKPFNFYIFPKPFNRTSPDIKFICQSSSIDFLASQG
FDFNKVFCDGIPYLNQEEEAQLREQTEERRNQHANGVGTPSYISPSSSKCPANVPEEQKD
FINKVIEKVEALFTNSEKTLDLEPCTGFQRKLIYQALNWKFPKGLHVETMETEKKERFIQ
VSKVDEEERKRREQQKLEREQEELNDAVGFSKVIHAISKSAKLVVGHNMLLDVMHTIHQF
YCPLPEDLQDFKEVTMCVFPRLLDTKLMASTQPFKELINNTSLAELEKQLKESPFKSPQV
ETAEGFKSYDTAQEQLHEAGYDAYITGLCFISMANYLGSFLTPPKAYISARSKLIEPFFN
KLFLMRIIDIPYLNITGPDLQPKRDHVLYVTFPKEWKTSDLYQLFSAFGNIQVSWIDDTS
AFVSLSQTDQVQIAMNTSRYAESYRIQTYAEYMQSKQQDKEKLSQTPKTWGEDSWVKSHY
TPSSTSSGFGYTRGLRKRSISPVQGEQGAEDALITDGWSHYSYPDNTGSKKMKTDAFSEQ
ANTEAVESKTSAGWLKTADSSDAAGLSPVPDEEGAPQVTGDTDGTITWQQTPSAVHKRKG
DKKKDKQTEAAESTTSLFEVPEVW
NT seq
2055 nt
NT seq
+upstream
nt +downstream
nt
atggaggtgacacgcaggaattttaaagactgtctgaatgcggtgtacagcgctataaat
gaagctgacttccttgccatcgatggggagttttcagggataagcgacggccccaatgtc
agtgcacttacaaatgggctggacacaccggaggagagatacacaaagctcaaaaagcac
tccatggactttctgcttttccagtttggattatgcacattcaagtacgaccaggcaaag
tcaaagtatatcacaaagccttttaatttttatatattcccgaaaccattcaacaggacg
tccccagacataaagttcatctgtcaaagttccagtattgactttctggccagtcaggga
tttgacttcaacaaggtgttctgtgatggaatcccctaccttaatcaagaggaggaagcc
cagctgagggagcagacagaagagaggagaaaccaacacgctaatggtgttggtacaccc
tcctacatctctccatcatcctctaaatgccccgcaaacgtacctgaagaacagaaagac
ttcatcaacaaagtcatagagaaggttgaagccctcttcacaaactcagaaaagaccttg
gatttggagccgtgcacagggtttcagagaaagctgatctaccaggccctgaactggaaa
tttcccaaggggcttcatgtggaaacgatggaaacagaaaagaaggagcgattcattcag
gtcagcaaagtagatgaagaggagaggaagaggagggaacagcagaaactggagagggag
caggaggagctaaatgatgctgttggcttctccaaggtcatccatgccatctccaaatct
gctaaacttgtggttggccataacatgctgttggatgtgatgcacaccatccaccagttc
tactgccctctgcctgaggatcttcaagactttaaagaggtcacaatgtgtgtgtttcca
agacttctggacacaaaattgatggcctctactcagcctttcaaggagcttataaataac
acatctctggcagagttggagaagcagctcaaggagagccccttcaagtcaccacaagtt
gaaacggcagagggtttcaagagttatgacacagcccaggaacagcttcacgaggccggg
tacgatgcctacatcactgggctctgcttcatctctatggccaactaccttggctctttc
ttgactccacccaaagcttacatctcagctcgctcaaaactaattgagcctttctttaat
aagcttttcctgatgaggattattgatattccttacctcaacatcacaggaccagatttg
caacctaagagagatcatgttctttatgtcaccttcccaaaagaatggaagacaagtgac
ctctaccagctcttcagtgcctttggaaacatccaggtctcatggattgacgacacatca
gcatttgtgtctctaagtcagaccgaccaggtacagatagctatgaacaccagccgctat
gcagagagttacaggatccagacgtatgcagagtacatgcagagtaaacagcaggacaaa
gagaagctcagtcagacacccaaaacatggggagaggacagctgggtgaagtctcactac
actccctcctctacttcctcaggttttggatataccagaggtttgaggaaacgcagcatc
agtcctgttcagggagagcagggagctgaagacgcgctaattacagacggctggagtcac
tactcatacccggataacacaggcagcaagaagatgaaaactgatgccttcagtgaacag
gcgaatactgaagctgttgaaagcaaaacctcagcaggatggctgaagacagcagattct
tcagatgctgcagggttaagtccggtccctgatgaggagggggctcctcaggtcacgggt
gatactgatgggacgatcacctggcaacaaaccccatcagcagtccacaaaaggaaaggt
gataagaagaaggacaaacagactgaagcagcagaatctacaacatctctgtttgaagtc
ccagaagtttggtag
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