Cheilinus undulatus (humphead wrasse): 121511950
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Entry
121511950 CDS
T07473
Name
(RefSeq) regulator of nonsense transcripts 1 isoform X1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
cud
Cheilinus undulatus (humphead wrasse)
Pathway
cud03013
Nucleocytoplasmic transport
cud03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
cud00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
121511950
03015 mRNA surveillance pathway
121511950
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cud03019
]
121511950
Enzymes [BR:
cud01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
121511950
5.6.2.5 RNA 5'-3' helicase
121511950
Messenger RNA biogenesis [BR:
cud03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
121511950
mRNA cycle factors
Common to processing body (P body) and stress granule
121511950
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
NPHP3_N
DEAD
nSTAND3
AAA_16
Helicase_RecD
ATPase
UvrD-helicase
SRP54
UvrD_C_2
AAA_22
AAA_5
Motif
Other DBs
NCBI-GeneID:
121511950
NCBI-ProteinID:
XP_041646765
LinkDB
All DBs
Position
7:complement(18395573..18420001)
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AA seq
1102 aa
AA seq
DB search
MSVEAYGPSSQTLTFLDTEETELLGADTQGSEYDFTDFTLPSQTQTQGQTQSQLDSQVNG
PDEGLLNGGVDDPVAKASQLLAELNFEEDEEDTYYTKDLPVHACSYCGIHDPACVVYCNT
SKKWFCNGRGNTSGSHIVNHLVRAKCKEVTLHKDGPLGETVLECYNCGCRNVFLLGFIPA
KADSVVVLLCRQPCASQSSLKDINWDSSQWQPLIQDRCFLSWLVKIPSEQEQLRARQITA
QQINKLEELWKDNPSATLEDLEKPGVDEEPQHVLLRYEDAYQYQNIFGPLVKLEADYDKK
LKESQTQDNITVRWDLGLNKKRIAYFTLPKTDSGDMRLMQGDEICLRYKGDLAPLWKGIG
HVIKVPDNYGDEIAIELRSSVGAPVEIPHNFQVDFVWKSTSFDRMQSALKTFAVDETSVS
GYIYHKLLGHEVEDVTIKCQLPKRFTAQGLPDLNHSQVYAVKTVLQRPLSLIQGPPGTGK
TVTSATIVYHLSRQGNGPVLVCAPSNIAVDQLTEKIDKTGLKVVRLCAKSREAIESPVSF
LALHNQISNMDSMPELQKLQQLKDETGELSSADEKRYRALKRTAERELLMNADVICCTCV
GAGDPRLAKMQFRSILIDESTQATEPECMVPVVLGAKQLILVGDHCQLGPVVMCKKAAKA
GLSQSLFERLVVLGIRPIRLQVQYRMHPALSAFPSNIFYEGSLQNGVTAADRIKKGFDFQ
WPQPDKPMFFYVTQGQEEIASSGTSYLNRTEAANVEKITTRLLKAGAKPDQIGIITPYEG
QRSYLVQYMQFSGSLHTKLYQQVEIASVDAFQGREKDFIILSCVRANEHQGIGFLNDPRR
LNVALTRAKYGVIIVGNPKALSKQPLWNNLLNNYKEQKVLVEGPLNNLRESLMQFSKPRK
LVNTINPGGRFMSTAMYDAREALIPGSAYDRSNTAGRPSNMYFQTHDQIGMIGAGPGHMA
AMNIPIPFNLVMPPMPPPSYLGQTNGPATGRGAMKGKPGRGGRQRVRGLGSQGTSQGNGP
NSQASQDGASQSFSQGPLTQGYISMSQPSQMSQPGLSQPELSQDSYLGDEFKSQIDVALS
QDSTYQGERAYQHGGVTGLSQY
NT seq
3309 nt
NT seq
+upstream
nt +downstream
nt
atgagtgtggaggcgtacgggccgagctcccaaaccctcaccttcctggacaccgaggaa
acggagttactcggagcagacacccagggctccgagtacgatttcacagactttaccctt
ccaagccagacacaaacccaaggccagacacagagccagctggacagccaggtcaatggt
cctgatgagggtctcctaaatggtggtgtggatgacccggtggccaaagccagccagctg
ctggccgaactgaactttgaggaagatgaagaggacacgtactacaccaaagacctacct
gtgcacgcatgcagctactgtgggatccacgatccagcatgtgtagtttactgcaacacc
agcaagaaatggttctgtaatggacgtggcaacacatctggcagtcacattgtgaaccat
ttggtaagagccaaatgtaaagaggtgacgctgcataaagatggaccactgggcgagaca
gttctggagtgttacaattgcggctgccgcaatgtcttcctcctgggcttcatcccagcc
aaggcagattctgtggttgtgttactttgcaggcagccctgtgctagccagagcagcctg
aaggacatcaactgggatagctcgcaatggcaacctctgatccaggatcgctgctttctg
tcctggctggtgaagattccgtcggaacaggagcagcttcgggcccgtcagatcactgcc
cagcagatcaacaagcttgaggagctgtggaaggacaacccaagtgccaccttggaagac
ctggagaaaccgggagtggatgaggagccccagcatgtgttactgcggtacgaggatgcc
tatcagtaccaaaatatctttggccctttggtcaaacttgaggcagactacgacaagaaa
cttaaggagtcacagacccaagacaatataacagtcaggtgggacctgggtctgaataaa
aagcggattgcctatttcacactacccaagacggattcaggtgatatgaggctgatgcag
ggtgatgagatttgcttgcggtacaagggagacctggccccgctgtggaaaggcatcggc
catgtcatcaaagttcctgacaactatggtgatgaaattgccattgagttgcgcagcagt
gttggagcacctgttgaaatcccccacaacttccaggtggacttcgtgtggaagtccact
tcctttgataggatgcagagtgccctcaagacatttgctgtagatgaaacctccgtgtct
ggatacatttaccacaaactgcttggccatgaggtggaggatgtcaccatcaagtgccag
ctgccaaagcgcttcactgcccagggcctgcctgacctgaatcactctcaggtgtacgct
gtaaagacggtgctgcagaggcctctcagtctgatccagggtcctcctggcaccgggaag
actgtcacctctgccaccatcgtataccatctgtctcggcaaggcaacggaccagttctg
gtgtgtgcacccagtaacatagctgtggatcagctgactgagaagattgataagactggc
ctgaaggttgttaggctttgtgccaagagcagggaggctatcgagtcaccagtgtccttc
ctggctctgcacaaccagatcagcaacatggacagcatgccggagcttcagaaacttcag
cagctgaaggatgagacgggtgagctgtcgtctgctgatgagaaacgctacagagctcta
aagcgcacagcagagagggagctgcttatgaatgctgatgttatctgctgtacctgtgtc
ggagctggagatccgcgtctggccaagatgcagttccgctccatcttgatcgacgagagc
acccaggccactgagccagagtgtatggtgcctgttgtgcttggagccaagcagctcatt
ctggttggcgatcactgccagctgggtcctgttgttatgtgtaagaaagccgccaaagca
ggtctgtcccagtctctgtttgaacgcctggtggtcctggggatccggccaatccgcctg
caggtccagtaccgcatgcacccagctctcagtgccttcccctctaacatcttctatgaa
ggatctctgcagaatggtgtcactgcagctgaccgcatcaagaagggcttcgacttccag
tggccgcagccagacaagcccatgttcttctatgtgactcagggccaggaagagattgct
agctctggaacctcctaccttaacagaacggaggctgctaatgtggagaagatcaccact
aggctgttgaaggcaggagccaaacctgaccagattggcatcatcaccccatatgagggt
cagcgctcatacctggtccagtacatgcagttcagtggctccctgcacaccaaactctac
cagcaagtggaaattgccagtgtggatgccttccagggcagagagaaggacttcatcatc
ctgtcttgtgtccgtgctaatgagcaccagggcatcggcttcctaaatgacccccgtcgt
ctcaacgtggcgctgaccagagcaaagtacggtgtaatcattgtggggaaccccaaggcc
ctctctaagcagcctctgtggaacaacctgctaaacaactacaaggagcagaaagtactg
gtggagggacccctcaacaatctgagggagagcctcatgcagttcagcaagccccgcaag
ctcgtcaacaccatcaaccctgggggacgttttatgagcaccgcaatgtacgatgcccgt
gaggccctcatccctggctctgcctatgatcgcagcaatactgcaggtcgtccatccaac
atgtacttccaaactcatgaccagattgggatgattggggcgggccccggtcacatggct
gctatgaatattcccatccccttcaacctggtgatgccaccgatgccgccgcccagttac
ctgggtcagaccaacggccctgctacaggtcgtggagctatgaagggtaagcctggacgt
ggtgggcggcagagagtccggggtctaggaagccagggtaccagtcagggtaatggacca
aatagccaggcaagccaggatggggcctcacagtccttctcccaggggccactgacacag
ggctacatctccatgagccaaccttctcagatgagccagcctggcctttctcagccggag
ctgtcccaggacagctacctgggtgacgagttcaagtctcaaatcgatgtggctttgtcc
caggactcgacttaccagggtgaacgtgcataccaacatggtggggtgactggactgtca
cagtattag
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integrated database retrieval system
