KEGG   Cheilinus undulatus (humphead wrasse): 121518946
Entry
121518946         CDS       T07473                                 
Symbol
rad50
Name
(RefSeq) DNA repair protein RAD50
  KO
K10866  DNA repair protein RAD50 [EC:3.6.-.-]
Organism
cud  Cheilinus undulatus (humphead wrasse)
Pathway
cud03440  Homologous recombination
cud03450  Non-homologous end-joining
cud04218  Cellular senescence
Brite
KEGG Orthology (KO) [BR:cud00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03440 Homologous recombination
    121518946 (rad50)
   03450 Non-homologous end-joining
    121518946 (rad50)
 09140 Cellular Processes
  09143 Cell growth and death
   04218 Cellular senescence
    121518946 (rad50)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:cud03032]
    121518946 (rad50)
   03400 DNA repair and recombination proteins [BR:cud03400]
    121518946 (rad50)
DNA replication proteins [BR:cud03032]
 Eukaryotic type
  DNA Replication Termination Factors
   MRN complex
    121518946 (rad50)
DNA repair and recombination proteins [BR:cud03400]
 Eukaryotic type
  DSBR (double strand breaks repair)
   HR (homologous recombination)
    MRN(MRX) complex
     121518946 (rad50)
    BRCA1-C complex
     121518946 (rad50)
   NHEJ (non-homologous end-joining)
    MRX complex
     121518946 (rad50)
SSDB
Motif
Pfam: AAA_23 Rad50_zn_hook AAA_21 SMC_N SbcC_Walker_B ABC_tran AAA_15 AAA_29 AAA_13 AAA_22 AAA_16 zf-met
Other DBs
NCBI-GeneID: 121518946
NCBI-ProteinID: XP_041657585
LinkDB
Position
12:24770822..24807697
AA seq 1312 aa
MSKIDKMSILGVRSFGIEDKDKQVISFFSPLTVLVGPNGAGKTTIIECLKYATSGELPPG
AKGAAFVHDPKDAHETDVRAQIRLLFTDVNGEKVTIQRSMSCTQKAKNYTFKSLEQVITR
MKGSERVSLSSKCGELDREMISSLGVSKPVLNHVIFCHQEESNWPLSEGKALKEKFDSIF
AATKYIKALETMRQLRLKQSQTVKECQVELRYLKQNKEKAQQIREIIATKEAQLMSSKDS
IQQIENQIDPLEIRLTDIDMKLGKVMKLDNDIKALDSRKKQMEEDNKELEEKMEQVFQGS
DEQLQDIYQNHQRTVREKERRLTDCQKELEKAGRECQRLNRVKADLLVEQGRLQLEADRQ
TQNIKNRDTQVRSLSSYLEMEGYDRPPFTSLQLESFKRNVTQRLEQEKDTATQVLADLQE
KEQGKQNSIDEMRDKKTGLERTVELKRDLQGKKQQELRNVRAELQRLEGSSSRLQELENE
LAKAERELQSVVQNANVEELKAEVVELQKEKSELDHAQRQLDKEMEMLNTHTTARTQMDM
LKKDKTEKEEQVRKIKSRHSEDLVSLLGHFPNKRELEDWIYAKSKEINSTRDRLAKINKD
LASSEQNKSHIAAEVRKKEQQLANDQEKFFNVCGSQDLEQDLTKLQEDLEKVSKQRAMLA
GATAVYTQFISQLTEEREPCCPVCQRTFLSESDLQEVISDMQSKLRLVPDKLKNTEQDLK
RKERKRDEMVALRPVRQSIIQFEEKELPELRNRLQTVNREIERLKGDVEEQETLLGTLMS
EEETAKACLQDISLMDRYVMDLREVERKIAQHAAKLQGVDLTRTIQQVSQEKQETQHKLD
TTSSKMELKRKLIQDQQDQIQMLKSAVNETRAEKLQLSSDMQKQQQLEEQCVEFTSEIQN
LTRDIREAKEQLSPLSAALEKLQQEKQELMERRRQKQEEGQEKINAIKEREKVIITLEKE
INKYINEGKDQYKEQKESELQETNTQLHEAEKHKEKINKEMGNIRQDIDTQKVQERWLQD
NLTLRKRVEELKEVVAKREALMKDMGNMQVMQLRQERRDSERKLEDLKKNRSVALGRQKG
FEEEILHYKKELREDQYDKADERYKDKMITLRTTELVIKDLDLYYKALDQTIMKFHSMKM
DEINKIIRDLWRSTYRGQDIEYVEIRSDVDENASAGVRRRVYNYRVVMVKGDTALDMRGR
CSAGQKVLASLIIRLALAETFCLNCGILALDEPTTNLDRDNIESLAHALVEIIKSRSRQR
NFQLLIITHDEDFVELLGRSSYIEHFYRIRKNQDQNSEITKCSISSLSSYLH
NT seq 3939 nt   +upstreamnt  +downstreamnt
atgtctaaaatagacaagatgagcatccttggggtgaggagctttgggattgaggacaaa
gacaaacaagtgatctctttcttctctcctctgactgtattggttgggccaaacggagca
ggaaaaacgactattatagagtgtctaaaatatgcaacatcaggagaacttccccctgga
gctaaaggagctgcctttgtccatgatccaaaggatgcccatgagacagatgtgcgagca
cagattcgtctcttatttactgacgtgaacggagagaaggtgacgatccagcgctccatg
tcttgcactcaaaaggctaaaaactacacctttaaaagtttggagcaggtcattaccaga
atgaagggcagtgagagggtgagcttgtcatcaaagtgtggtgaactagaccgggagatg
atctcctctctgggtgtatcaaagcctgtcttgaatcacgtcatcttctgtcaccaagaa
gagtcgaactggccacttagcgagggcaaagcgctcaaagaaaagtttgactccatcttt
gctgcaacaaagtatatcaaagctctggagacgatgcgccagctgcgtctcaaacagagt
cagacagtcaaagagtgtcaggtggagctgcgctacctgaagcagaacaaggagaaagcc
cagcagatcagagagatcatagccaccaaggaggctcagctgatgtcctctaaagacagc
atccagcagatagagaaccagatcgatccactggagattagactgactgatattgacatg
aaactggggaaagtgatgaaactggacaacgacatcaaggctttagacagcagaaagaaa
cagatggaggaggacaacaaggagcttgaggaaaaaatggaacaggtgtttcaaggttca
gatgagcaactgcaggacatttaccagaaccatcagaggacagtaagggagaaggagcgc
aggctgaccgactgccagaaggagctggagaaggctggccgggagtgtcagagacttaac
agagttaaagctgatctcctggtagaacaaggtcgtcttcaacttgaagctgaccgccaa
actcaaaacatcaagaaccgtgacactcaggttcgctctctgtcatcttatctggagatg
gagggttatgaccgtcctcccttcacttctcttcaacttgaaagcttcaagcgtaacgtc
acacagaggctggagcaggaaaaagacacagccactcaggttctggcggacctgcaggaa
aaagagcagggtaagcagaactccatagatgaaatgagggataagaagactggcctggag
aggactgtggagcttaagagagacctgcagggaaagaaacaacaagaactgaggaatgtg
agggcagagctacagaggctggagggatcatccagccgactgcaggagctggagaacgaa
ctggccaaagcggagcgtgagttacagagtgtggttcaaaacgccaatgtagaggagcta
aaggccgaagtggttgagcttcagaaggaaaaatctgaactggaccatgcacagagacag
ctggacaaagagatggagatgctcaacacacacaccactgcacggacacagatggacatg
ttaaaaaaggacaagactgagaaggaggagcaggttcgtaagatcaagtctcgtcacagc
gaagatctggtgtcactgctcggtcactttcctaacaagagagagctggaggactggatc
tatgccaagtctaaagaaatcaacagtactagggacagacttgccaaaatcaataaggac
ctggcatcaagtgagcagaataaaagccacattgctgctgaggtacggaaaaaggaacag
cagctagcaaacgaccaagaaaagttctttaatgtgtgtggcagtcaggatctggagcag
gacctgaccaaactgcaagaggacctggaaaaagtctccaaacaaagagccatgttggct
ggagccacagcagtgtacactcagttcatcagccagctgacggaggagagagagccctgc
tgccctgtgtgtcagcggacattcctctccgagtcggatctgcaggaagtcatcagcgac
atgcagtccaagctacgcctggtgccagacaagctgaaaaacacagagcaggatctgaag
aggaaggagaggaagagagatgagatggtggctctcagacctgtcaggcagtccatcata
cagtttgaggaaaaggagctgcctgagttgagaaaccgcttgcagacagtgaacagagaa
atcgaaaggctgaagggcgatgtggaggagcaagaaactctgcttggtaccctaatgtcg
gaggaggaaacggcaaaggcctgccttcaggacatctcacttatggacagatatgtgatg
gacctaagagaggttgagaggaaaatagctcagcatgcagccaaactccagggagttgac
ctgacaagaacaatccagcaagtcagtcaggagaaacaagaaactcagcacaagcttgac
accacctcgagcaagatggagctgaaacgtaagctgatccaggaccagcaggatcagatt
cagatgcttaaaagtgccgtgaacgagacgagggcagagaaacttcagctgagcagcgat
atgcagaaacagcagcagctggaggagcagtgtgtcgagttcacctctgaaatacaaaac
ttaacccgggacatcagggaagcgaaggaacagttgtctcctttatctgctgctctggag
aagctgcagcaagagaagcaggagctgatggagcgcaggaggcagaagcaggaagagggc
caggagaagatcaatgccattaaagagcgagagaaggtgatcataacattggaaaaagag
atcaacaaatacatcaacgaaggaaaagatcaatacaaagagcaaaaagagtctgagctt
caagaaaccaacacgcagctccatgaagctgagaagcataaagaaaagatcaacaaggag
atgggaaacattcgtcaggacatagacactcagaaggtccaggagcgctggcttcaggac
aacctgacactgaggaagcgagttgaggagttgaaggaggttgttgcaaaacgtgaagct
ctaatgaaggacatgggcaacatgcaagtcatgcagctgcgccaagaacgacgtgattct
gaacgcaagttggaggatttgaagaagaaccgcagtgttgcactgggtcgacaaaaaggc
tttgaggaggagatactgcattacaaaaaagagctgcgagaagatcagtatgacaaagca
gacgagcgctacaaagacaagatgatcacattgaggaccacagagctggtcatcaaagac
ctggatctctattacaaggcccttgatcaaaccatcatgaaatttcacagcatgaagatg
gatgagatcaacaagattatcagagacctgtggcgcagcacctacaggggtcaagatatt
gagtatgtagagatcaggtccgatgtggacgagaacgcttctgcaggagtcaggcgaaga
gtttacaactacagagttgtgatggtgaaaggagacacagctttggatatgagaggacgc
tgtagtgcgggtcagaaggtgctggcatccctgatcattagactagccctggcagagact
ttctgtctaaactgtgggatcctagccctggatgaacccaccaccaacctggaccgggac
aacattgagtcactcgcacatgcccttgtggaaatcattaagagtcggtctcgccagcgc
aacttccagctgctgatcatcacccatgatgaggactttgtggagctgttgggtcggtcc
agctacatcgagcacttctatcgcatccgaaagaaccaagaccagaactctgagatcaca
aagtgcagcatcagctccctctcttcttaccttcactga

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