Cheilinus undulatus (humphead wrasse): 121520135
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Entry
121520135 CDS
T07473
Name
(RefSeq) regulator of nonsense transcripts 1-like
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
cud
Cheilinus undulatus (humphead wrasse)
Pathway
cud03013
Nucleocytoplasmic transport
cud03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
cud00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
121520135
03015 mRNA surveillance pathway
121520135
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cud03019
]
121520135
Enzymes [BR:
cud01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
121520135
5.6.2.5 RNA 5'-3' helicase
121520135
Messenger RNA biogenesis [BR:
cud03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
121520135
mRNA cycle factors
Common to processing body (P body) and stress granule
121520135
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
ATPase
NPHP3_N
nSTAND3
Helicase_RecD
DEAD
AAA_16
SRP54
UvrD-helicase
UvrD_C_2
AAA_22
Motif
Other DBs
NCBI-GeneID:
121520135
NCBI-ProteinID:
XP_041659367
LinkDB
All DBs
Position
13:complement(31532425..31551383)
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AA seq
1110 aa
AA seq
DB search
MSVEAYGPSSQTLTFLDTEETELLGADTQGSEYDFTDFTLPSQTQTQGQTQSQLEHQVNG
PDGLLQNGDDPVVKASQLLAELNFEEDEEDTYYTKDLPIHACSYCGIHDPACVVYCNTSK
KWFCNGRGNTSGSHIVNHLVRAKSKEVTLHKDGPLGETVLECYNCGCRNVFLLGFIPAKA
DSVVVLLCRQPCASQSSLKDINWDSSQWQPLIQDRCFLSWLVKIPSEQEQLRARQITAQQ
INKLEELWKENPTATLEDLEKPGVDEEPQHVLLRYEDAYQYQNIFGPLVKLEADYDKKLK
ESQTQDNITVRWDLGLNKKRIAYFTLPKTDSDMRLMQGDEICLRYKGDLAPPWKGIGHVI
KVPDNYGDEIAIELRSSAGAPVEIPHNFQVDFVWKSTSFDRMQSALKTFAVDETSVSGYI
YHKLLGHEVEDVVIKCQLPKRFTAQGLPDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVT
SATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIHQTGLKVVRLCAKSREAIDSPVSFLAL
HNQTRNMDSMPELQKLQQLKDETGELSSSDEKRYRALRRTAERELLMNADVICCTCVGAG
DPRLAKMQFRSILIDESTQATEPECMVPVVLGAKQLILVGDHCQLGPVVMCKKAAKAGLS
QSLFERLVVLGIRPIRLQVQYRMHPALSAFPSNIFYEGSLQNGVTAADRMKKGFDFQWPQ
PDKPMFFYVTQGQEEIASSGTSYLNRTEAANVEKITTRLLKAGAKPDQIGIITPYEGQRS
YLVQYMQFSGSLHTKLYQEVEIASVDAFQGREKDFIILSCVRANEHQGIGFLNDPRRLNV
ALTRARYGVIIVGNPKALSKQPLWNHLLNYYKEQKVLVEGPLNNLRESLMQFSKPRKLVN
TINPGGRFMSTAMYDAREALIPGSVYDRSSNGRTSNMYFQTHDQIGMIGTGPNPMTSMNI
PIPFNLVMPPIPPPGYMGQVNGPSGGRGGGMKGKAGGGGGGARGGRQRNRGNMGNHSGGE
RGQHGHMSGSQASQDLGSQPFSQGPLTQGYINMSQPSQMSQPGLSQPELSQDSYLGDEFK
SQIDVALSQDSTYQGERAYQHGGLTGLSQY
NT seq
3333 nt
NT seq
+upstream
nt +downstream
nt
atgagtgtggaggcgtacgggccgagctcacagactctaacgttcctcgacacggaggaa
accgagctgctgggagcggacacccagggctccgagtacgactttaccgatttcaccctg
ccgagccagacccagactcaaggccaaacccagagccagctggaacaccaggtaaatggc
cctgacggtctgctacagaacggagatgatcctgtggtgaaagccagtcagctgctggca
gagttaaactttgaggaggatgaagaagacacctactacaccaaggatctacctatacat
gcctgcagttactgtggcattcatgacccagcttgtgtggtttactgcaacaccagcaag
aagtggttctgtaacggccgtggaaacacttccggcagccatatagtgaaccacctggtg
cgagcaaagtccaaggaggtgaccctgcataaagatggtcccctgggggaaacagttctt
gagtgctacaactgtggctgtcgcaacgtcttcctcctgggctttatccctgctaaagct
gactcagtagtggtgttgctgtgcaggcagccatgtgccagccagagcagcctgaaggac
atcaactgggacagctcacagtggcagccactcatccaggaccgctgcttcctgtcctgg
cttgtcaagatcccatcagagcaggagcaactccgtgctcgtcagatcaccgcccaacag
atcaacaagctggaggagctctggaaggaaaatcccactgcgactctggaggacctggag
aaacctggtgtggatgaggagccccaacatgtgctgcttcgctacgaggatgcttaccag
taccagaatatatttggtcccttggtgaagctggaggctgactatgataagaaactcaaa
gagtcccagactcaagacaatattacagtcagatgggacctggggctgaataaaaagagg
attgcttactttactcttcccaagacagactcagacatgcgactgatgcagggagatgaa
atttgcctgaggtacaaaggagacctggcccctccatggaaaggcattggacatgtcatc
aaagtccctgataactatggtgatgaaatcgccatagagctgaggagcagtgctggggct
ccagtggaaatccctcacaacttccaggttgattttgtttggaaatccacctccttcgac
agaatgcagagcgcccttaagacctttgctgtcgatgagacttcagtgtctggttacatc
taccacaaactgcttggacacgaggtcgaagatgttgtcatcaagtgccagctgcccaaa
cgctttacagctcagggcctgcctgacctgaaccactcccaggtgtatgctgtgaagacg
gtgctgcagcgtcctctcagtctgatccagggtcctcctggcacagggaaaactgtgacc
tctgccaccattgtctatcatctggctcgccagggcaatgggccggtgctggtctgtgct
cccagtaacattgctgtcgaccagctgacagagaagatccaccagactggactaaaggtg
gtgaggctgtgtgcaaagagcagagaagctattgattcgcctgtgtccttcctggctttg
cacaatcagacccgcaacatggacagtatgcctgaacttcagaagctccaacagctgaag
gatgagaccggagagctgtcctcctctgacgagaagcgataccgagctttgagacgcaca
gcagagagggagctgctaatgaatgctgacgtgatctgctgcacatgtgttggtgcgggt
gatcctcgtctggctaagatgcaattccgctctatcctgattgatgagagcacccaggcc
actgaaccagagtgcatggtgcctgtagttctcggagcaaaacagttgattctggtgggt
gatcactgccagctgggccctgtggtgatgtgtaagaaggcagctaaagctggtctgtct
cagtccctgttcgagcgtctggtggttttggggatccggcctatccgtctgcaggttcag
taccgcatgcacccagccctcagtgccttcccctccaacatcttctacgagggctctctg
cagaacggagtcactgctgcggaccgtatgaagaaaggttttgacttccagtggccacag
cctgacaagccgatgttcttttatgtcactcaaggccaagaggaaattgctagctctgga
acatcctatctcaacaggactgaggcagctaacgtggagaaaataaccaccaggctgctt
aaagctggcgcaaaaccagaccagattggcatcattacgccttatgagggacagaggtcc
tacctggtccagtacatgcagttcagtggctcccttcacaccaaactctaccaggaggtg
gaaatagccagtgtggacgcctttcaaggcagagagaaggacttcatcattctgtcttgc
gtgagggccaatgagcaccaaggaatcggcttcctcaacgatcccagacgtcttaatgtg
gcgctcaccagggccagatatggtgtgattattgtgggaaacccaaaggccctgtccaag
caaccgctgtggaaccacttgttgaactactacaaggagcagaaggtccttgtggaaggg
cctctcaacaacctgagggagagcctcatgcaatttagcaagccacgcaagctggtcaac
accatcaaccctggtggtcgattcatgagcacagccatgtatgatgctagggaggctctc
attcctggatctgtttatgaccgcagcagcaatgggcggacgtctaatatgtattttcag
acccatgaccagatcggtatgattggtacaggacccaatccaatgacatccatgaacatc
cccatccccttcaacctggtcatgccccccatacctccgccagggtacatgggacaggtc
aatggaccatcaggaggtcgtggtggaggaatgaaaggaaaggcaggcggtggtggaggt
ggggctcggggtggccgccaaagaaaccggggcaacatggggaaccacagtggaggagag
cgtgggcagcatggccacatgagcggcagccaggccagccaggacctaggctcccagccg
ttctctcaggggcctctgacgcagggctacatcaacatgagccagccgtcacagatgagc
cagccagggctctcccagcctgaactctcacaggacagttaccttggagatgagttcaag
tcccagattgatgtggctctgtcccaggattccacctatcagggggagcgggcctaccaa
cacggtggtctaactggactgtcccagtactag
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integrated database retrieval system
