Cheilinus undulatus (humphead wrasse): 121520580
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Entry
121520580 CDS
T07473
Symbol
lig1
Name
(RefSeq) DNA ligase 1
KO
K10747
DNA ligase 1 [EC:
6.5.1.1
6.5.1.6
6.5.1.7
]
Organism
cud
Cheilinus undulatus (humphead wrasse)
Pathway
cud03030
DNA replication
cud03410
Base excision repair
cud03420
Nucleotide excision repair
cud03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
cud00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
121520580 (lig1)
03410 Base excision repair
121520580 (lig1)
03420 Nucleotide excision repair
121520580 (lig1)
03430 Mismatch repair
121520580 (lig1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
cud03032
]
121520580 (lig1)
03400 DNA repair and recombination proteins [BR:
cud03400
]
121520580 (lig1)
Enzymes [BR:
cud01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
121520580 (lig1)
6.5.1.6 DNA ligase (ATP or NAD+)
121520580 (lig1)
6.5.1.7 DNA ligase (ATP, ADP or GTP)
121520580 (lig1)
DNA replication proteins [BR:
cud03032
]
Eukaryotic type
DNA Replication Elongation Factors
Other elongation factors
121520580 (lig1)
Prokaryotic type
Elongation factors (archaeal)
Other elongation factors
121520580 (lig1)
DNA repair and recombination proteins [BR:
cud03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Long Patch-BER factors
121520580 (lig1)
NER (nucleotide excision repair)
Other NER factors
121520580 (lig1)
MMR (mismatch excision repair)
Other MMR factors
121520580 (lig1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
DNA_ligase_A_C
Motif
Other DBs
NCBI-GeneID:
121520580
NCBI-ProteinID:
XP_041660033
LinkDB
All DBs
Position
13:complement(4810413..4936544)
Genome browser
AA seq
1010 aa
AA seq
DB search
MQRSIASFFQPKGKDVQKKTAEEPVKKTVKSPLKVQNGVHEADSPIKKVSKRSRQILDSD
DEEAPVVKEQVAPKGQGDKEAPAKTEKKDDVFKAVPTPMSPPPAPATPMTPATPATPATP
ASSASPGTPCTPNSISPSGIVKRKTARKMFPKRKLDESRSESQKDEAEVKEEQGQQNKRP
RVDSNGSSAGNTDEPMEEGAKEEGVETAVTEANSPDEEVGKKKKEEEVKAKEEEQAERQE
SDEEEKKAEGAVKKNEAKEKTDDESGPADAKKEVVEKDTLEGEKSLKSQTEKKQKEAKEQ
KDKEPPKKAPISSFFAPRKAAVKTEKSEKNEGEKKTSAERKTSEESKETKGESTSGQTDY
NPSRSNYHPVDHACWKQGQKVPYLAVARTFEKIEEDSGRLRNIETLSNLFRSVLLLSPDD
LLCCVYLCLNQLGPAHLGMELGVGETVLMKAVAQATGRQLDKIKAEAQEKGDLGLVAESS
RSNQRMMFQPASLTAGGVFRKLKEIASMSGNSAMNKKIDIIKGLFVACRFSEARFIVRSL
AGKLRIGLAEQSVLSALSQAVCLTPPGQAFPPAVIDAGKGMSAESRRAWIEEKSLILKQT
YCEMPNYDVLIPVLLKEGIDELPNHCKLTPGVPLRPMLAHPTKGVGEVMKKFDEAAFTCE
YKYDGERAQIHILENGEVRIFSRNQEDNTSKYPDIIARIPKVKKDSVISCVLDSEAVAWD
REKKQIQPFQVLTTRKRKDVDASEIKVQVCVYAFDLLYLNGESLVRQPLCRRRALLRESF
SEVEGEFTFARFIDSDNTETIAEFLEQSVKDSCEGLMVKTLEKDATYEIAKRSHNWLKLK
KDYLEGVGDTVDLCVIGAYLGKGKRTGTYGGFLLACYDEENEEFQSVCKIGTGFKDEDLE
QHYKFLKEHILSKPRAYYRFDQSAEPDVWLDAVQVWEVKCADLSLSPVYKAAMGMVDPVK
GISLRFPRFLRIRDDKKPEDATTGAQIADLYKKQQQIQNQGEKADPEDYY
NT seq
3033 nt
NT seq
+upstream
nt +downstream
nt
atgcagcggagcatcgcatcattcttccagcccaaaggcaaagatgttcagaagaaaact
gcagaggaacctgtgaaaaagactgtgaaaagtcctctcaaggtgcagaacggcgtccac
gaggctgattcacccatcaagaaagtttccaaacgcagccgtcagatcctggacagcgat
gatgaagaagcaccagtcgttaaggaacaagtcgctccaaagggccaaggagacaaagaa
gctcctgctaaaacagaaaagaaggacgatgtgttcaaggccgttcccaccccgatgtca
cctccacctgccccagccacccctatgacccctgccacaccggctaccccggccaccccg
gcctcctcagcctcacctggaaccccctgcaccccaaactccatctcaccctctgggatt
gtaaaacgcaagacagcgaggaaaatgttccccaagaggaagcttgatgagagccggagc
gagagtcagaaggacgaggccgaggtcaaggaggagcagggtcagcaaaacaaacgaccc
cgtgttgacagcaacggcagcagtgcagggaacaccgatgaacccatggaagagggagca
aaggaagagggagttgaaacagcagtgacggaggctaacagcccagacgaggaggtgggg
aagaagaaaaaagaggaagaagtgaaggccaaggaggaggagcaggccgagagacaggag
tctgatgaggaggaaaagaaagccgagggggcggtgaagaaaaatgaagcaaaggagaag
acagatgatgagagcgggcccgccgatgccaagaaggaggtggttgaaaaggacacgctc
gaaggagaaaagagcctgaaaagtcaaacagagaaaaaacagaaagaggcaaaagagcaa
aaagataaggagccacccaagaaagcccccatcagcagtttctttgctccaagaaaagca
gcagtgaagacggagaaatcagagaagaatgaaggagagaaaaagacgagtgcagagagg
aagacttcagaggagagcaaagagactaaaggtgagtcaacctcaggacaaacagactac
aatccatccagatcaaactaccatcctgtggaccacgcctgctggaaacagggccaaaaa
gtaccgtacttggcggtggcacgcacctttgagaagattgaagaggactctggcaggctg
agaaacatcgagactctgtcgaacctgtttcgctctgtgctgctgctctctccagatgac
ctgctgtgctgtgtgtacctgtgtctgaaccagctgggtcctgcccacctggggatggag
cttggcgttggagagacggtgctgatgaaagctgttgctcaagcaactgggcgacaattg
gacaaaatcaaggcagaggcgcaggagaaaggagatttgggccttgtagccgagagttcc
cgtagcaaccagcgcatgatgttccaaccggccagtctgacagcagggggcgtgttcagg
aaattgaaggaaattgccagcatgagtgggaactcggccatgaataagaaaatcgacatc
atcaaaggcctctttgtggcgtgccgcttttccgaggcccgcttcatcgtcagatccctg
gctgggaagctgaggataggactggctgagcagagcgtcctctcagctttgagccaggct
gtgtgcctgacgccccctggacaagcttttcctccagctgtgattgacgctgggaagggg
atgagcgctgagagcaggcgggcttggatcgaagagaagagtctcattctcaaacagact
tactgtgagatgcccaattacgacgtccttatccctgttcttctaaaagagggcatagac
gagctgcccaatcactgcaagctcactccaggagtaccgctgagacccatgttggcacat
cccaccaagggtgtcggtgaggtgatgaagaagtttgatgaggcagcattcacctgcgag
tataaatacgacggagagcgtgcacagattcacatcctggagaatggagaggttcgaatc
ttcagccgcaaccaggaagacaacaccagcaaataccctgatatcatcgctcgtattccc
aaggtgaagaaggactctgtgatatcctgcgtgctggactctgaggcggtggcctgggat
cgtgagaagaagcagatccagcccttccaggtcctcaccacccgcaagagaaaggacgtg
gatgcctcggagatcaaagtccaagtgtgcgtgtacgcctttgacctcctctatctcaac
ggcgagtccttggtgcgacagccgttgtgtcggcgtcgagctctgctgagagaaagcttc
tcagaagtggagggagagtttacatttgcccgattcatcgactctgacaacacagagacc
atcgcagagttcctggagcagtccgtcaaagactcctgtgaaggcctcatggtgaagacg
ctggagaaggacgccacctatgaaattgccaaacgctctcataactggctcaagctgaag
aaggactacctggaaggcgttggcgacaccgtggacctgtgtgtgattggcgcctacctg
ggaaaaggcaagaggacgggtacctacggaggcttcctgctggcctgctatgatgaggag
aatgaggagtttcagtctgtctgcaagatcgggacaggcttcaaggatgaagatctggag
cagcattacaagttcttaaaggagcacattctttccaaaccccgtgcctactaccgtttc
gaccaatcagcagagcccgacgtctggctggatgctgtgcaggtttgggaggtgaagtgt
gccgacctgtcgctgtcaccggtctacaaggctgccatgggaatggttgatccagtaaag
ggcatttctctcagattccctcgcttccttcggatcagagatgacaagaagccagaggac
gccacaactggagctcagattgctgatttgtacaagaagcagcagcaaatccagaatcag
ggagagaaagctgaccccgaggactactactga
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