KEGG   Cheilinus undulatus (humphead wrasse): 121524005
Entry
121524005         CDS       T07473                                 
Symbol
snrnp40
Name
(RefSeq) U5 small nuclear ribonucleoprotein 40 kDa protein
  KO
K12857  Prp8 binding protein
Organism
cud  Cheilinus undulatus (humphead wrasse)
Pathway
cud03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:cud00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    121524005 (snrnp40)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:cud03041]
    121524005 (snrnp40)
Spliceosome [BR:cud03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   U5 snRNP specific factors
    121524005 (snrnp40)
 Complex C
   U5 SnRNP specific factors
    121524005 (snrnp40)
SSDB
Motif
Pfam: WD40 WD40_Prp19 WD40_CDC20-Fz WD40_WDHD1_1st Beta-prop_TEP1_2nd WDR55 EIF3I Beta-prop_EML_2 Beta-prop_CAF1B_HIR1 WD40_MABP1-WDR62_2nd Beta-prop_WDR90_POC16_2nd Beta-prop_WDR75_1st Beta-prop_TEP1_C Beta-prop_EML NBCH_WD40 Beta-prop_IFT122_1st Beta-prop_EIPR1 Beta-prop_SPT8 WDR90_beta-prop_4th ANAPC4_WD40 Beta-prop_SCAP Beta-prop_DCAF4 Beta-prop_RIG_2nd WD40_MABP1-WDR62_1st WD40_RFWD3 Beta-prop_Vps41 Beta-prop_IFT140_1st Beta-prop_WDR19_1st Beta-prop_WDR75_2nd Beta-prop_WDR35_TULP_N Beta-prop_NWD2_C Cytochrom_D1 Beta-prop_IFT140_2nd WDR54 Beta-prop_VPS8 WD40_like Beta-prop_Nup120_160
Other DBs
NCBI-GeneID: 121524005
NCBI-ProteinID: XP_041665097
LinkDB
Position
16:34428283..34442508
AA seq 347 aa
MIEPMKRAADMAVVPTAVKRPRTELVAAAQSQQLVAMGPPRSSSLQAPIMLMSGHEGEVY
CCKFHPNGATLASSGFDRLILLWNVYGECENYATLKGHSGAVMELHYNTDGSMLFSASTD
KTVGVWDSETGERIKRLKGHTSFVNTCYPARRGPQLVCTGSDDGTVKLWDIRKKGAIHTF
QNTYQVLAVTFNDTSDQILSGGIDNDIKVWDLRQNKLIYNMHGHGDSVTGLSLSSEGSYL
LSNSMDNTVRIWDVRPFAPKERCVKIFQGNVHNFEKNLLRCSWSTDGSKIAAGSADRFVY
IWDTTSRRILYKLPGHAGSVNEVSFHPEEPVVLSGSSDKRLYMGEIQ
NT seq 1044 nt   +upstreamnt  +downstreamnt
atgattgagcctatgaagagggcggcggacatggcggtggttcctaccgctgtgaagcgg
cccaggacggagctggtggcggcggctcagtcccagcaactcgtggccatgggtccccca
cgcagctccagcctgcaggctcccatcatgctgatgtctggccatgaaggcgaggtctac
tgctgcaagtttcaccccaatggagccactctagcttcctctggatttgacaggctcata
ttgctgtggaacgtgtatggagaatgtgaaaattatgcgactctgaagggccacagcgga
gcagtgatggagctgcattacaacacagacggaagcatgctgttttcagcgagcacagac
aagactgtgggcgtgtgggacagtgaaaccggagagaggatcaagcgtctgaaaggccac
acctccttcgttaacacgtgctacccagctcgcagaggacctcagctcgtctgcactggc
agtgatgacgggacagtgaagctgtgggatatccgtaagaaaggggcgatccatactttc
cagaacacctaccaggtgctggctgtgacctttaacgacaccagcgaccagatcctgtca
ggaggcatcgacaatgacatcaaggtgtgggatctgaggcagaacaagctgatctacaac
atgcatggacacggagactcagtaaccgggctgagtcttagctctgagggatcgtacctc
ctctcaaactccatggacaacacagttcgtatttgggatgttcgaccgtttgcacccaaa
gagagatgtgtgaagattttccagggcaacgtccacaactttgaaaagaatctgctgagg
tgctcctggtcgactgacggcagtaagatagctgcaggctccgctgacaggttcgtgtac
atctgggacactacatcacggaggatcctgtacaagctgccgggccacgctggctctgtc
aatgaagtgtcctttcacccagaggagcccgtagtgctgtctggctccagtgataaacgc
ctctacatgggagagattcagtag

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