Cheilinus undulatus (humphead wrasse): 121524982
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Entry
121524982 CDS
T07473
Symbol
mtrex
Name
(RefSeq) exosome RNA helicase MTR4
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
cud
Cheilinus undulatus (humphead wrasse)
Pathway
cud03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cud00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
121524982 (mtrex)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cud03019
]
121524982 (mtrex)
03041 Spliceosome [BR:
cud03041
]
121524982 (mtrex)
03009 Ribosome biogenesis [BR:
cud03009
]
121524982 (mtrex)
03016 Transfer RNA biogenesis [BR:
cud03016
]
121524982 (mtrex)
Enzymes [BR:
cud01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
121524982 (mtrex)
Messenger RNA biogenesis [BR:
cud03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
121524982 (mtrex)
Spliceosome [BR:
cud03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
121524982 (mtrex)
Complex C
U4/U6.U5 tri-SnRNP related factors
121524982 (mtrex)
Ribosome biogenesis [BR:
cud03009
]
Eukaryotic type
Pre-60S particles
Helicases
121524982 (mtrex)
Transfer RNA biogenesis [BR:
cud03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
121524982 (mtrex)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
Helicase_C
DEXQc_Suv3
ResIII
Mt_ATP-synt_D
nSTAND3
AAA_22
Motif
Other DBs
NCBI-GeneID:
121524982
NCBI-ProteinID:
XP_041666582
LinkDB
All DBs
Position
17:complement(16641590..16670375)
Genome browser
AA seq
1036 aa
AA seq
DB search
MADAFGDGLFSVFDEEQQTTSSKKIPASLTPDIGKVVSKNGTDKDAGPSVRVKREADSDG
GEEVVFVKKPRHEAVSANDLNLAEFMPQVKVEQVETMEGCSHEVALPAADDYKPLKPRVG
KAAKEYPFILDPFQREAILCIDNNESVLVSAHTSAGKTVCAEYAIALALREKQRVIFTSP
IKALSNQKYREMYEEFQDVGLMTGDVTINPTASCLVMTTEILRSMLYRGSEIMREVAWVI
FDEIHYMRDSERGVVWEETIILLPDNVHYVFLSATIPNARQFAEWICHLHKQPCHVVYTD
YRPTPLQHYIFPAGGDGLHLVVDENGDFREDNFNTAMQVLRDAGDSGSSSGGGKWDRGRK
GPTKGPSSVFKIVKMIMERNFQPVIIFSFSKKECEAYALQVAKLDFNRDDEKRLVEEVFN
NAVDCLSDEDKKLPQVEHVLPLLKRGIGIHHGGLLPILKETIEILFSEGLIKALFATETF
AMGINMPARTVLFTGARKFDGKKNRFLTSGEYIQMSGRAGRRGMDDRGIVIFMVDEKMSP
AVGKQLLKGSADPLNSAFHLTYNMVLNLLRVEEINPEYMLEKSFYQFQHYRALPGVVEKI
KKYEEQYHSIEIPNEESVVTYFKIRQQLAKLGKEIQEFIHKPKYCLPFLQPGRLVKVKNE
EHDFGWGVVVNFCKKSNVKTSTDTDPLYVVEVLLHCSKESVKDAATEAAKPAGQGETGEM
QVVPVMLHLLTSISSVRLYIPKDLRPFDNRQLMLKSIQEVQKRFPDGVPLLDPIDDMGIK
DPALKKVIQKVEAFEHRMYSHPLHSDPNLESIYSLCEKKALIAADVRTAKRELKKARTVL
QMDKLKCRKRVLRRLGFASPSDVIEMKGRVACEISSADELLLTEMVFNGLFNDLTVEQAT
ALLSCFVFQENANEMPKLTEQLAAPLRQMQECAKRIAKVSADAKLEVDEETYLNQFKPHL
MDVVYAWANGATFSQICKMTDVFEGSIIRCMRRLEEVLRQMCSAAKAIGNTELENKFAEG
ITKIKRDIVFAASLYL
NT seq
3111 nt
NT seq
+upstream
nt +downstream
nt
atggcggacgcctttggagacgggttgttcagcgtgtttgatgaagaacaacaaacgaca
tcgagtaaaaagatccctgcgtctttgacaccagacataggtaaagttgttagtaaaaat
ggaactgacaaggatgctggtccatctgtccgagttaagagggaggcagacagtgatggt
ggagaggaggtggtgttcgtcaagaagcctcgacatgaagcagtctctgcaaatgacctg
aatcttgcagaatttatgccccaagtgaaggtggagcaagttgagaccatggaaggctgc
tcacatgaggttgctcttcctgctgctgatgattataaaccattgaaaccacgagtggga
aaggcagccaaggaatatccttttattcttgacccattccagcgtgaggccattttatgt
attgacaacaatgagtcagtgctcgtgtctgcacacacttctgcgggaaagactgtttgt
gctgaatatgccattgctctagcccttagagagaagcagagagtgatcttcaccagtccc
attaaggcgctctccaaccagaagtacagagagatgtacgaggagtttcaggatgtggga
ctgatgacaggtgatgtcaccatcaaccccacagcctcctgcctcgtcatgacaacagag
atcctaaggagcatgctgtaccgaggctctgagatcatgagggaagtggcatgggttatc
tttgacgagatccattacatgagagattcagagcgtggtgtggtgtgggaggagactatc
attcttcttcctgacaacgtgcactacgtcttcctgtccgccaccatccccaacgccaga
cagtttgctgagtggatctgccacttacataaacagccatgccatgtagtctacacagac
taccgtcctactccgctgcagcactacatctttccagcagggggcgacggactccatctg
gttgttgatgagaatggagatttcagagaggacaatttcaacacagctatgcaggttctt
agggacgctggggattctgggagcagcagtggaggaggcaaatgggacagaggacgaaaa
ggacccactaaaggtccatccagtgtatttaagattgtaaagatgatcatggagaggaac
ttccagcctgtcatcattttcagcttcagtaagaaagagtgtgaggcctacgctctgcag
gttgccaaactggacttcaacagagatgatgagaaacgtctggtggaggaagtgtttaac
aatgcggtggactgtctgtcagacgaagacaagaagctccctcaggtggagcatgtgctg
ccgttgttgaaaagggggataggaatccatcatggaggtctgctgccaatcctgaaagag
accatagagatccttttctctgagggcctgatcaaggccctgtttgccacggagacattt
gccatgggcatcaacatgccagctcgcactgtgctcttcaccggcgcacgcaagtttgat
ggcaagaaaaaccgctttcttacatcaggtgagtacatccagatgtctgggcgagctggg
agaagaggaatggatgacaggggcattgttatcttcatggtggatgaaaagatgagtcca
gctgtgggcaaacagctgctcaagggctcagcagatcctttgaacagcgccttccacctg
acctacaacatggtgctcaacctgctgcgagtggaggagatcaaccctgagtacatgctg
gagaaatctttctaccagtttcagcattatagagctttgcctggtgtggtagagaaaata
aagaaatatgaggagcagtaccactccattgagattcccaatgaagagagtgtggtcact
tactttaaaatccgacagcagcttgccaaactaggcaaagagatccaagagttcatccac
aaacctaaatactgcttacccttcctgcagccgggacggcttgtgaaggtgaaaaatgaa
gagcatgactttggctggggagttgttgtaaacttctgcaagaagtctaatgtaaaaacc
agtacagacactgatccgctgtatgtggtggaggttttgttgcactgtagtaaagagagt
gtgaaagacgctgcaacagaggctgctaagcctgcaggtcaaggggagactggagagatg
caggttgttccagtgatgctccatctcctcacctccatcagctcggtccgtctttacatc
cccaaagacctcaggccctttgacaacaggcagctcatgcttaaatctatacaggaggtg
cagaaacgattcccagatggcgttcccctcctcgatcccatagacgacatgggcatcaaa
gacccggcactgaagaaagttatccagaaagtggaggccttcgagcaccgcatgtactca
caccccctgcacagcgacccaaaccttgaatctatctattctctgtgtgagaagaaagct
ctgattgctgcagatgttcgaacagccaagcgggagctgaagaaagctcgcaccgtgctg
cagatggacaagctgaagtgcaggaagagagtcctgaggcgccttggcttcgctagtccc
tccgatgtcatcgaaatgaaaggacgggttgcctgtgaaatcagcagtgctgacgagctc
cttctgaccgagatggttttcaacggcctcttcaacgatctgacggtggaacaagccacc
gccctgctgtcctgcttcgtcttccaggagaacgccaatgagatgcccaaactgacagaa
caactggcagcacctctgagacaaatgcaggagtgtgcaaagcgaatcgccaaagtttct
gcagacgccaaactggaggtggacgaggagacgtatctgaaccagttcaaacctcacctg
atggacgtggtgtacgcctgggccaacggagcaacgttttctcaaatctgcaagatgaca
gatgtctttgaagggagtatcattcgctgcatgcgtcgtctggaggaggtcctcagacaa
atgtgttcagcagcaaaggccatcggaaacacggaactggagaacaagtttgctgaagga
ataacgaagatcaaaagagacattgtttttgctgccagtctctacctttaa
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