Corynebacterium ulcerans 0102: CULC0102_0864
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Entry
CULC0102_0864 CDS
T02171
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
cue
Corynebacterium ulcerans 0102
Pathway
cue03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
cue00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
CULC0102_0864 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cue03400
]
CULC0102_0864 (mfd)
Enzymes [BR:
cue01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
CULC0102_0864 (mfd)
DNA repair and recombination proteins [BR:
cue03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
CULC0102_0864 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
Cas3-like_C_2
RecG_dom3_C
AAA_22
UB2H
AAA_30
DUF3638
Motif
Other DBs
NCBI-ProteinID:
BAM27063
LinkDB
All DBs
Position
899674..903465
Genome browser
AA seq
1263 aa
AA seq
DB search
MSTDNAAANSHHPAMLAGLLKVAATDPKIKGLLEHVGDPALHITGIDQSRPWAIGALSHR
APVLVITATGREAEDLTAELRAMLGDSVAWFPAWETLPHERLSPAADVAGQRARILSHLN
DLRVVVTAARGISQPILQNAEGRNALLLEAEKDYDLEELTRQLVFRAYQHVDLVAKRGEF
ATRGGILDIFPTTMDRPVRLEFWGDEITEIREFSVADQRAIPDSSHGAVEIFPARELLVT
PGVAERAGDLALKYQGNPTLQELLSKLAEGTPADGMEALIPALVDTPLVTLPELMPQGTH
VIAVGPEKIRTRVADLQATDAEFLAAGWEAAAMGAAGPVAAQGLDLEASSYRSYESLEIS
ARQAGCSWWTFAPSGMFEADDADTLPLDFEAGPTPRGDLSQIEEMMSLLLAHTTAGGRAA
FIAPAKGAIKRMVDRFKEKGIPTKVATPGWEPTPGEVTLYQALSHAGLVFPKVRKKAGTE
ALPLVVVTETDLTGNRVGDIAGAKRRPAKRRNRVDPLALKTGDFVVHETHGIGRFLKMTE
RTITSGDETSRREYIVLEYAPAKRGQPADQLFVPMDSLDLLSKYVGGEKPSLSKMGGSDW
KNTKKKARAAVREIAGELVELYAKRQSAPGHPFAPDSPWQHEMEDNFPYVETEDQMMAIE
AVKADMEKPVPMDRVIVGDVGYGKTEVAVRAAFKAVQDGKQVVVLVPTTLLAQQHLSTFD
ERMAGFPVNLRGLSRFTSTIEAKETIKGLADGTVDIVIGTHRLLQTGIQWKNLGLVIVDE
EQRFGVEHKEHIKALRTHVDVLTMSATPIPRTLEMSMAGIREMSTILTPPEDRHPILTYV
GAQEDKQIAAAIRRELLRDGQVFFVHNKVSDIEKKARDLRDLVPEARIVVAHGQMSEELL
EQTVQGFWDREFDVLVCTTIVETGLDIANANTLIVENAHHMGLSQLHQLRGRVGRSRERG
YAYFLYPKGQTLTENSYDRLATIAQNNDLGAGMAVAMKDLEMRGAGNVLGAQQSGHIAGV
GFDLYVRLVGEAVEAYRALADGKIIDATDDGPKEIRIDLPVDAHIPESYINAERLRLEVY
RKLAASQSNADLILAVEEMEDRYGPLPEEVKRLLAVARLRHLARSAGISDIGVQGTRIKI
HPVELPDSKQVRLKRLLPSATYRAAAKAIQLSFPKEGRNVTDKPLRDVALLQWVADFLSE
MFEIPRISVTGEAVPEKIISVGESPSPGRARTAQRTVTRRSERNDDEDYEDKREARRRKY
RMR
NT seq
3792 nt
NT seq
+upstream
nt +downstream
nt
ttgtcaactgataacgcagccgctaacagccaccatcccgccatgcttgcggggctactc
aaagttgcggcgacagaccccaaaatcaagggactgctggaacacgttggtgacccagcg
ctgcatattaccggcatagatcaatctcgtccctgggctatcggagcgttatctcaccga
gccccagtactcgttatcacggcgaccgggcgtgaagccgaggatctcactgcggaactt
cgggcaatgctgggggactctgtagcttggttccccgcatgggagactcttcctcacgag
cgtcttagcccagccgccgatgtggcgggtcagagggctaggatcttgtcccatctgaat
gatttgcgcgtggtggtgacagccgcacgcggcattagtcaaccgattcttcagaacgca
gaggggcgtaatgccctccttcttgaggctgaaaaagattatgacttagaagagctcact
cgacagctcgtttttagggcttatcagcacgttgatcttgtggctaagcgcggggagttt
gctacccgaggcggaatcctcgatatattccccacgacgatggatcgacctgttcgctta
gaattctggggagacgagatcacggagatccgggaattctcagtggctgaccagcgggca
atcccggattcttcccacggagctgtggaaattttccctgctcgcgaactcctcgtcaca
cccggcgtagcagagcgcgccggcgatttagcgttgaagtatcagggaaaccccaccctg
caagaacttttatccaagctggcggagggcactccggcagacggcatggaagcgcttatc
ccagcgctcgtagatacccctttggttactcttcctgagctcatgccacagggcacacac
gtgatagcagtcggcccagaaaaaattcgcaccagggtggcggatttgcaggccaccgac
gcagagttccttgcagcgggatgggaggccgcagcaatgggtgccgctgggccggttgct
gcccaaggactagacctagaagctagctcctatcgctcgtatgagtctttagaaatatcc
gcgcgccaggcggggtgctcatggtggacctttgcgccttccggcatgtttgaagcagac
gatgcggacactcttcccctcgactttgaagcaggtcccaccccgcgcggtgatctctct
cagattgaagagatgatgtccctgctgctagcccataccaccgcaggcggtagggctgcc
tttatcgccccagctaagggtgcgatcaaacgcatggtggataggttcaaagaaaaaggc
atccccacaaaggtagccacaccgggctgggagcccacgccgggagaagtgactctctac
caggcgcttagccacgctggcctcgtctttcccaaagtccgtaaaaaagctggaaccgag
gcattgcctcttgtcgtcgtcacagagaccgatctcaccggtaaccgcgtgggcgatatc
gcaggagcaaagcgtcgtccagctaaacgacgcaaccgcgtagatccgctcgcgctgaag
accggcgactttgtggtgcatgaaacccacggcatcggtcgattcctcaaaatgactgag
cgcacgattacgtcaggggacgagacctcgcgacgggaatacatcgttctggaatacgca
ccggcaaaacgcgggcagcccgcagatcagctttttgttcccatggactcccttgatctc
ctgagcaaatacgtgggaggcgagaaaccctcgttatccaagatggggggctccgattgg
aagaacactaagaaaaaggcccgcgctgcagttcgggaaatcgccggtgaactcgttgag
ctttatgccaagcgacaatccgcgccgggacacccctttgcacctgattccccctggcaa
catgagatggaagacaactttccatacgttgaaactgaagaccagatgatggccatcgag
gcggtcaaagcggatatggaaaaacccgtccccatggatcgcgtcatcgtaggagacgtg
gggtacggcaagacagaagttgctgtgagggccgcttttaaggctgttcaggatggcaaa
caagtggtagtcctcgttcctaccacgttgctagcgcagcagcatctgtccacgtttgat
gaacgtatggccggattcccggtgaatctgcgtggcttaagccgttttacctccacgatt
gaagcaaaagaaaccataaaagggcttgccgacggcaccgtggatatcgtgatcggtacg
catcgcctgcttcaaacaggaattcagtggaagaacctcggactggtcatcgtcgatgag
gaacaacgttttggtgtggagcataaagaacacatcaaagcactgcgtactcatgtcgat
gtgctgacaatgtctgccacaccgatcccacgaactttggaaatgtctatggctgggatc
cgcgagatgtcgaccattttgactcctcccgaggatcgccaccccatcttgacgtatgtt
ggcgcacaagaagataaacaaatcgctgcagctatccggcgcgaattgttgcgtgacggc
caggtgttctttgtacataacaaggtctccgatattgaaaagaaagctagagacctgcga
gacctagtgccggaagctcgtattgttgttgcgcatggtcagatgagtgaggaactactg
gaacaaactgtccaggggttctgggatcgtgaatttgatgtgctggtgtgcaccaccatc
gtggagactggtttggatattgccaatgccaataccctcatcgtggagaacgcacatcat
atgggactttcgcagcttcatcagctgcgcggacgcgtagggcgttcccgggaacgtggt
tacgcgtacttcctgtatcccaagggacaaacactgacggaaaactcctacgaccgcctg
gccaccatcgctcagaacaacgatttgggtgctggtatggcagtggccatgaaagacctg
gaaatgcgaggcgccggtaacgtacttggtgcgcagcaatctggccatatcgcaggcgta
ggatttgatctttatgtgagacttgtcggtgaagccgtggaggcctaccgagcccttgca
gacggaaaaatcatcgatgccaccgatgacgggccaaaagaaatccgcatcgatttgccg
gtggatgcgcacatcccagagtcgtatatcaacgcagaacgactccggcttgaggtgtat
aggaagctggcggcgtcgcaaagcaatgccgatctgatactcgcagtagaagagatggag
gatcgctacggaccattgcctgaagaggtcaaacgcctcctggctgtggcccggctacgg
cacctcgccagatccgcgggcatcagcgacattggtgtgcagggaacgcggatcaagatc
catccggtggaactcccagattccaaacaagtccggcttaaacggctactgccttccgca
acgtatcgcgctgcggctaaggctatccagctgtcctttcctaaggaggggcgaaacgtt
accgataagccgcttcgcgacgtcgccctgctccaatgggtagcagacttcctatcggaa
atgtttgaaataccacgcatctcagttactggggaagccgtgcctgaaaaaatcatctcc
gtgggggaatcacccagccctgggcgggcgcgcactgctcaacgtaccgtcactagacgg
agcgagcgtaatgacgacgaggactatgaggacaaacgtgaagcgcgtaggaggaagtat
cggatgcgttga
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integrated database retrieval system
