Curtobacterium aetherium: KM842_11665
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Entry
KM842_11665 CDS
T10177
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
cuf Curtobacterium aetherium
Brite
KEGG Orthology (KO) [BR:
cuf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
cuf03016
]
KM842_11665
Enzymes [BR:
cuf01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
KM842_11665
Transfer RNA biogenesis [BR:
cuf03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
KM842_11665
Prokaryotic type
tRNA splicing ligases
KM842_11665
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
QWS32910
LinkDB
All DBs
Position
complement(2546094..2547260)
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AA seq
388 aa
AA seq
DB search
MQKITNRLLSWASMLEETTEQQARTTSRMPFVYPHLALMPDAHLGLGATVGSVIPTLGAV
MPAAVGVDIGCGMIAVRTQFSRADLPEDLRPLREAIERAVPLSAGATNRTVVETAVPRIA
ELETLAVQADFDPAQSLVGWRDQLGTLGSGNHFIEVSLDEEDRVWLFLHSGSRGVGNRIA
QRHIAVAKEAMRRWWIDLPEPDLAYLVEGTPEFDRYIAELRWAQHFALLNREEMMDRVVR
QLAEVVGTDVQELERINCHHNFTQRETHWGKSVWVSRKGAIQAAAGQPGLIPGSMGTASY
VVEGRGDKPSLESSPHGAGRSYSRSAARRTFTHEQLREAMAGIEYRDTDAFLDEIPAAYK
PIDQVMADAADLVTVRHTLRQIVNVKGD
NT seq
1167 nt
NT seq
+upstream
nt +downstream
nt
atgcagaagatcacgaaccgcctcctctcctgggcctcgatgctcgaggagaccaccgag
cagcaggcccgcacgacgtcccggatgcccttcgtgtacccgcacctcgcgctcatgccc
gacgcgcacctcggcctcggcgccaccgtcgggtcggtcatccccaccctcggtgcggtc
atgcccgcagccgtcggcgtggacatcggctgcgggatgatcgcggtccggacgcagttc
tcccgcgccgacctgcccgaggacctccgaccgctccgcgaggcgatcgagcgggcggtc
ccgctgtccgccggggcgaccaaccggacggtcgtcgagacggccgtcccgcggatcgcc
gagctcgagacgctcgcggtgcaggccgacttcgaccccgcccagtcgctcgtcgggtgg
cgggaccagctcggcaccctggggtcgggcaaccacttcatcgaggtgtcgctcgacgag
gaggaccgcgtctggctcttcctgcactccggctcgcgaggcgtcggcaaccggatcgct
cagcggcacatcgccgtcgcgaaggaggcgatgcggcgctggtggatcgacctgcccgag
cccgacctcgcctacctcgtcgagggcaccccggagttcgaccggtacatcgccgagctg
cggtgggcccagcacttcgcgctcctcaaccgcgaggagatgatggaccgcgtcgtccgt
cagctcgccgaggtcgtcggcaccgacgtgcaggagctcgagcggatcaactgccaccac
aacttcacgcagcgcgagacgcactgggggaagtcggtgtgggtctcccgcaagggcgcg
atccaggcggcggccgggcagcccggactcatccccggatcgatgggcacggcgtcgtac
gtcgtcgaggggcggggggacaagccgtcgctcgagtcgtccccgcacggggccggccgg
tcgtactcgcggtccgcggcgcggcggacgttcacccacgagcagctgcgcgaggcgatg
gccggcatcgagtaccgcgacaccgacgcgttccttgacgagatcccggccgcgtacaag
ccgatcgaccaggtgatggcggacgccgccgacctcgtcacggtccgccacacgctgcgg
cagatcgtcaacgtcaagggggactga
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