Curtobacterium sp. SGAir0471: C1N91_03615
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Entry
C1N91_03615 CDS
T05978
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
cug
Curtobacterium sp. SGAir0471
Pathway
cug03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
cug00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
C1N91_03615 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cug03400
]
C1N91_03615 (mfd)
Enzymes [BR:
cug01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
C1N91_03615 (mfd)
DNA repair and recombination proteins [BR:
cug03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
C1N91_03615 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
Helicase_C
TRCF
CarD_TRCF_RID
ResIII
Cas3-like_C_2
RecG_dom3_C
DUF3638
Motif
Other DBs
NCBI-ProteinID:
QCR42762
UniProt:
A0A4P8SLZ9
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All DBs
Position
774202..777813
Genome browser
AA seq
1203 aa
AA seq
DB search
MTISGIIPALSRASAFDRVLRAAGRDADFSVVDGLRVPLLGALLAERNGPQCLFVVTATG
REAEAVRGAFTCTVPDAEVLEFPAWETLPHERLSPSAQTVGTRIATLRKLAAWQDADPAD
RRTTVVVASVRAALQPIAGNLTSLAPVALVTGSRGNDLAAIASQLVDLAYARVDLVTRRG
EFAVRGGILDVFPPGADHPVRVDFFGDEIEAIKAFSVADQRTTDDDLGSVELTASRELLL
SDDVRQRAREMLHEFPNLSQMLAKIAEGIPVEGMESLAPALVQDLVPITSYLPEAATIAV
LSPERVAGRAHSLAETNTEFLQAAWSAAVAGAQAPIDLDAGNFLTVQQLKNGRGQRTWWT
VTPFDSGLDEGDRERVLTDAEAAAEAGEYIRVRAESIPSFAGSADGAVAHVKQLVDDGWA
VVVTAQGKGLVERAVQVLADAGVAARADDLTAPPEPGMTIVTTATVEAGFATPDPRIAVL
SEAEFYGRSVQQGARTVKKLAGRRKNVVDPLQLKPGDVVVHNTHGIGKFVELVSREVSSG
GRNAVKTQREYLVLEYAPSKRNYPGDKLFVPTDQLDQLSRYVGGENPTLSKMGGSDWSAA
KSKARKAVRDIAVDLVKLYSARMASKGHAFGPDTPWQRELEEAFPFAETADQLTTIDEIK
RDMESPIPMDRLLSGDVGYGKTEVAIRAAFKAVQDGKQVAVLVPTTLLVRQHMETFQERF
AGFPVHLRALSRFQTEKESKETIAGLADGTVDIVIGTHRILSQNIQFKDVGLVIIDEEQR
FGVEHKDQLKKLKTNVDVLAMSATPIPRSLEMAVTGIREMSTLATPPEDRHPILTFVGPQ
SDLQVAAAIRRELLREGQVFYVHNRVKDIQSVASHLAEIVPEARIQVAHGQMSEGTLEQV
MVDFWERKFDVLVSTTIVETGLDIANANTLIIDKADKYGLSQLHQLRGRVGRGRERGYAY
FLYDADKPLSETAQDRLETIAANNELGAGMQVAMKDLEIRGAGNLLGGEQSGHIAGVGFD
LYLRMIGEAVSQFRGDVAEGQTELRLEIPVDAHIPEDYVESERLRLEAYQKLSAASAPAA
QPEAIDMVLDELTDRYGQPPQPVLTLVEVSRLRRMAQQVGLSDVVVMGSNLRIAGKELAD
SAQVRLKRMFPGARWFPQQDAASIPLPKPHGETLPDDGLIQWVESILTAVYGASKAPAET
PAG
NT seq
3612 nt
NT seq
+upstream
nt +downstream
nt
gtgacgatctcgggcatcatccctgcgctctcgcgcgcctccgcgttcgatcgcgtcctc
cgcgctgccgggcgtgacgcggacttttccgtcgtcgacggcctgcgcgtcccgctgctc
ggtgccctgctcgccgagcgcaacggtccccagtgcctcttcgtcgtcaccgccaccggg
cgcgaggccgaggcggtccgcggtgccttcacgtgcaccgtccccgatgccgaggtgctc
gagttccccgcgtgggagaccctgccgcacgagcgactgagcccgagtgcccagacggtc
ggcacccgcatcgcgacgctccggaagctcgcggcgtggcaggacgccgacccggccgac
cgtcgcacgaccgtcgtcgtggcgagcgtccgcgccgcgctgcagccgatcgcggggaac
ctgacgtcgctcgcaccggtcgcactggtcaccggctcccgcggcaacgacctcgcggcg
atcgcgtcgcagctcgtcgacctggcgtacgcccgggtcgacctcgtcacccgccgtggc
gagttcgcggtgcgcggtggcatcctcgacgtcttcccgcccggggccgaccacccggtg
cgcgtcgacttcttcggcgacgagatcgaggcgatcaaggccttctcggtcgccgaccag
cgcaccaccgacgacgacctcggctcggtcgagctcacggcctcgcgtgaactcctgctg
agcgacgacgtgcggcagcgtgcgcgcgagatgctgcacgagttcccgaacctgtcgcag
atgctcgcgaagatcgccgagggcatcccggtcgagggcatggagtccctcgcgccggcc
ctcgtgcaggacctcgtcccgatcacgagctacctgcccgaggccgcgacgatcgccgtg
ctctcgccggagcgcgtggccggccgagcgcacagcctcgctgagacgaacaccgagttc
ctgcaggcggcctggagcgccgcggtcgccggggcccaggcgccgatcgacctcgacgcc
ggcaacttcctcaccgtgcagcagctgaagaacggtcgcggccagcgcacctggtggacc
gtcacgccgttcgactccgggctcgacgagggcgaccgcgagcgcgtgctcaccgacgcc
gaggcggccgccgaagcgggggagtacatccgcgtccgggccgagtcgatcccgagcttc
gcgggcagtgccgacggcgccgtcgcgcacgtgaagcaactggtcgacgacggctgggcc
gtggtcgtcaccgcgcagggcaagggcctcgtggagcgcgcggtgcaggtcctcgccgac
gcgggtgtcgccgcgcgggccgacgacctcaccgcgccgccggagccggggatgacgatc
gtcacgaccgccacggtcgaggcgggcttcgcgacccccgatccgcggatcgccgtcctg
agcgaagccgagttctacggccgcagcgtgcagcagggcgcgcgcaccgtgaagaagctc
gccgggcgccgcaagaacgtcgtcgacccgctgcagctcaagccgggcgacgtcgtcgtg
cacaacacccacggcatcggcaagttcgtcgagctcgtctcgcgcgaggtcagctccggc
ggtcgcaacgccgtgaagacgcagcgcgagtacctcgtgctcgagtacgcgccgtcgaag
cggaactacccgggcgacaagctcttcgtgcccaccgaccagctcgaccagctgtcgcgg
tacgtcggcggcgagaacccgacgctgtcgaagatgggcggttcggactggtccgcggcg
aagtccaaggcccgcaaggccgtccgcgacatcgccgtcgacctggtgaagctgtactcg
gcgcgcatggcgtcgaaggggcacgcgttcggcccggacaccccgtggcagcgtgagctg
gaagaagccttcccgttcgccgagaccgccgaccagctcaccacgatcgacgagatcaag
cgcgacatggagagcccgatcccgatggaccggctgctctccggcgacgtcggctacggc
aagaccgaggtcgcgatccgcgcggcgttcaaggccgtgcaggacggcaagcaggtcgcc
gtgctcgtgccgacgacactgctcgtgcgccagcacatggagacgttccaggagcgcttc
gcgggcttccccgtgcacctgcgcgccctgagccggttccagaccgagaaggagtcgaag
gagaccatcgccggcctcgccgacggcaccgtcgacatcgtcatcggcacgcaccgcatc
ctgtcgcagaacatccagttcaaggacgtcgggctcgtcatcatcgacgaggagcaacgc
ttcggcgtcgagcacaaggaccagctcaagaagctcaagacgaacgtcgacgtcctggcg
atgtccgcaacgccgatcccgcgctcgctggagatggcggtcacgggcatccgcgagatg
tcgacgctcgcgaccccgccggaggaccgccacccgatcctgaccttcgtcggtccgcag
tccgacctgcaggtcgccgccgccatccggcgcgagctgctgcgcgagggccaggtgttc
tacgtgcacaaccgcgtgaaggacatccagtcggtggcgtcgcacctggccgagatcgtc
ccggaggcccggatccaggtcgcgcacgggcagatgtccgagggcaccctcgagcaggtc
atggtggacttctgggagcgcaagttcgacgtgctcgtctcgacgaccatcgtggagacc
ggcctcgacatcgcgaacgcgaacacgctcatcatcgacaaggcagacaagtacgggctg
tcgcagctgcaccagctgcgtggtcgcgtcggccgtggtcgcgagcgcggctacgcgtac
ttcctctacgacgccgacaagccactgtccgagaccgcgcaggaccgcctcgagaccatc
gccgcgaacaacgagctgggcgccggcatgcaggtcgcgatgaaggacctcgagatccgc
ggcgcgggcaacctgctcggtggcgagcagtcaggccacatcgccggtgtcgggttcgac
ctgtacctgcgcatgatcggcgaggccgtgtcccagttccgcggtgacgtggccgagggg
cagacggagctccggctcgagatcccggtcgacgcgcacatcccggaggactacgtcgag
tccgagcggctccgactcgaggcgtaccagaagctctcggcggcctcggccccggcggcg
cagcccgaggcgatcgacatggtgctcgacgagctgaccgaccgctacggccagcccccg
cagccggtgctcaccctggtcgaggtctcgcgcctccgccgcatggcccagcaggtcggt
ctgtccgacgtcgtcgtgatgggctcgaacctgcggatcgccggcaaggagctcgccgac
tcggcccaggtccggctgaagcgcatgttccccggcgcgcgctggttcccccagcaggac
gccgcgagcatcccgctgccgaagccgcacggcgagacgctgcccgacgacgggctcatc
cagtgggtggagagcatcctgacggcggtctacggcgcgtcgaaggcgcccgcggagacg
cccgcgggctga
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integrated database retrieval system
