Cupriavidus necator NH9: BJN34_03235
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Entry
BJN34_03235 CDS
T05121
Name
(GenBank) RNA helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
cuh
Cupriavidus necator NH9
Pathway
cuh03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cuh00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BJN34_03235
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cuh03019
]
BJN34_03235
Enzymes [BR:
cuh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
BJN34_03235
Messenger RNA biogenesis [BR:
cuh03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
BJN34_03235
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_22
AAA_19
P-loop_SecA
Sacchrp_dh_NADP
Motif
Other DBs
NCBI-ProteinID:
AQV92906
UniProt:
A0A1U9UJB0
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All DBs
Position
1:691445..693040
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AA seq
531 aa
AA seq
DB search
MSFSELGLSDKIVRAVAEQGYTTPTPIQAQAIPAVLKGGDLLAGAQTGTGKTAGFTLPML
QLLSESAARAAQGAQRPGRVAVRALVLTPTRELAAQVEESVRNYGKYLRLRSMVMFGGVG
INPQIEQLKRGVEIVVATPGRLLDHVSQRTIDLSQVELLVLDEADRMLDMGFIHDIRKIL
NVLPAKRQNLLFSATFSDDIRALADRLLNNPASIEVARRNTTAETVDQRVYPVDRERKRE
LLAHLVRQHDWHQVLVFTRTKHGANRLAEQLTKDGLSALAIHGNKSQSARTRALSEFKAG
TLRLLVATDIAARGIDIDQLPHVVNFDLPNVPEDYVHRIGRTGRAGAEGEAISLVCVDEI
ALLRDIERLIKRKLEQTALPGFEVDPSIAPEPIQKGRQQRGGGGQSQGQGQGRGRAQARP
AGKEGEGAQRQRPAREAQGAPRQAQGGQPRTRTAEGGQRGNGAANGNRGAQQPAGGARNP
APRREGQEPARQQRAAGQPARQPHDAAPAPARNRRPAPQAALLGGNRKPAR
NT seq
1596 nt
NT seq
+upstream
nt +downstream
nt
atgtctttttctgaactcggcttgtccgacaagattgtgcgtgccgtagccgaacagggc
tacaccacgccgacccccatccaggcccaggcgattcccgccgtcctcaaagggggcgac
ctgctggccggcgcgcagaccggcaccggcaagaccgccggctttacgctgccgatgctg
cagctgctgtctgaatccgcggcacgcgccgcccagggcgcgcagcgtccgggccgcgtc
gcagtgcgtgcgctggtgctgacccccacgcgcgaactggccgcccaggtcgaagagagc
gtacgcaactacggcaaatacctgcgcctgcgttcgatggtgatgttcggcggcgtcggc
atcaatccgcagatcgaacagctcaagcgcggcgtcgagatcgtcgtggccacgcccggc
cgcctgctggaccacgtgtcccagcgcaccatcgacctgtcccaggtggagctgctggtg
ctcgatgaagccgaccgcatgctcgacatgggcttcatccacgatatccgcaagatcctc
aacgtgctgccggccaagcgccagaacctgctgttctcggcgacgttctcggacgatatc
cgcgcgctggccgaccgcctgctgaacaacccggcctcgatcgaggtggcgcggcgcaat
accaccgccgaaaccgtggaccagcgcgtctacccggtggaccgcgagcgcaagcgcgaa
ctgctggcccacctggtgcgccagcatgactggcaccaggtgctggtgttcacgcgcacc
aagcatggcgccaaccgcctggccgagcaactgaccaaggacggcctgtcggcactggcg
atccacggcaacaagagccagtcggcgcgcacgcgcgcgctgtcggaattcaaggccggc
acgctgcggctgctggtggcgaccgatattgccgcgcgcggcatcgacatcgatcagctg
ccgcacgtggtcaacttcgacctgcccaatgtgcccgaggactacgtgcaccgcatcggc
cgcaccggccgcgccggcgccgagggcgaggccatctcgctggtctgcgtggacgagatt
gcgctgctgcgcgatatcgaacgcctgatcaagcgcaagctcgagcagaccgcgctgccg
ggcttcgaagtggacccgagcatcgcgcccgagccgatccagaagggccgccagcaacgc
ggcggcggtggccagagccagggtcagggccagggccgcggacgcgcccaggcacgcccg
gccggcaaggaaggcgagggcgcccagcgccagcgtcccgcgcgcgaagcgcagggcgcg
ccgcgacaagcgcagggcggccagccgcgcacgcgcaccgctgaaggcggccagcgcggc
aacggtgccgccaatggcaaccgtggcgcccagcagcccgccggcggcgcgcgcaacccc
gcaccgcgccgcgaaggccaggagccggcacgccagcaacgggccgcgggccagcccgcg
cgccagccgcatgatgcggccccggccccggcacgcaatcgccgtccggcgccgcaggcc
gcgctgctcggcggcaaccgcaagccggcgcgctga
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