Cupriavidus necator NH9: BJN34_12225
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Entry
BJN34_12225 CDS
T05121
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
cuh
Cupriavidus necator NH9
Pathway
cuh03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cuh00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BJN34_12225
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cuh03021
]
BJN34_12225
03019 Messenger RNA biogenesis [BR:
cuh03019
]
BJN34_12225
Transcription machinery [BR:
cuh03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
BJN34_12225
Messenger RNA biogenesis [BR:
cuh03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
BJN34_12225
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
AAA_25
OB_RNB
NACHT
S1CSD-TOTE-2
DnaB_C
ATPase
AAA_19
Motif
Other DBs
NCBI-ProteinID:
AQV94653
UniProt:
A0A1U9UPT7
LinkDB
All DBs
Position
1:2689355..2690617
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AA seq
420 aa
AA seq
DB search
MHLTELKSLHVSALLEMAATLEIDNAQRMRKQELMFAILKKRAKMGETIFGDGTLEVLPD
GFGFLRSPETSYLASTDDIYISPSQIRRFNLHTGDTIEGEVRTPKDGERYFALVKVDKVN
GQPPEAVKNRIMFENLTPLHPNRPLTLERDIKAEENITGRIIDMIAPIGRGQRALLVASP
KSGKTVMLQHIAHAIANNHPEADLFVLLIDERPEEVTEMMRSVRGEVVASTFDEPAIRHV
QVAEMVIEKAKRLVELKRDVVILLDSITRLARAYNTVVPASGKVLTGGVDANALQRPKRF
FGAARNLEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHLERRLAEKRVYPSINL
NKSGTRREELLIKPEILQKIWILRKFISDMDEVQAMEFIMDKMKATKNNAEFFDMMRRGG
NT seq
1263 nt
NT seq
+upstream
nt +downstream
nt
atgcacctgacagaactcaaatcgcttcacgtgtctgcgcttctcgaaatggcggctacg
ctcgagatcgacaacgcacaacggatgcgcaaacaggaactgatgtttgcgatcctgaag
aagcgcgccaagatgggcgaaaccatctttggagacggcacgctcgaggtgctgcccgac
ggcttcggcttcctgcgctcgcccgagacctcgtatctggccagcacggatgacatctac
atcagcccgtcgcagatccgccgcttcaacctgcataccggcgatacgatcgagggtgaa
gtgcgcacgcccaaggacggcgaacgctactttgcgctggtcaaggtggacaaggtcaac
gggcagccgcccgaagcggtcaagaaccgcatcatgttcgaaaacctgacgccgctgcac
ccgaaccggccgctcacgctcgaacgcgatatcaaggccgaagagaacatcaccggccgc
atcatcgacatgatcgcgccgatcggccgcggccagcgcgcgctgctggtggcatcgccc
aagtccggcaagaccgtgatgctgcagcacattgcccacgccatcgccaacaatcatccc
gaagccgacctgttcgtgctgctgatcgacgagcgcccggaagaagtgaccgaaatgatg
cgctcggtgcgcggcgaagtggtcgcgtcgaccttcgacgaaccggccatccgtcacgta
caggttgccgaaatggtgatcgaaaaggccaagcgcctggtcgaactgaagcgcgacgtg
gtgatcctgctggactccatcacgcgtctggcgcgcgcctacaacaccgtggtgccggcc
tcgggcaaggtgctgaccggtggtgtggacgccaacgcgctgcagcgtccgaagcgcttc
tttggtgccgcgcgtaacctggaagaaggcggctcgctgaccatcatcgccaccgcgctg
atcgaaaccggcagccgcatggacgacgtgatctacgaagagttcaagggcaccggcaat
atggaagtgcacctggagcgccgcctggccgagaagcgcgtctatccgtcgatcaacctg
aacaagtcgggtacgcgccgcgaagaactgctgatcaagccggaaatcctgcagaagatc
tggatcctgcgcaagttcatctccgacatggatgaagtgcaggcgatggaattcatcatg
gacaagatgaaggccacgaagaacaacgccgagtttttcgatatgatgcgcagaggcggc
taa
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