Cupriavidus necator NH9: BJN34_14645
Help
Entry
BJN34_14645 CDS
T05121
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
cuh
Cupriavidus necator NH9
Pathway
cuh03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cuh00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BJN34_14645
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cuh03019
]
BJN34_14645
Enzymes [BR:
cuh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
BJN34_14645
Messenger RNA biogenesis [BR:
cuh03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
BJN34_14645
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
ERCC3_RAD25_C
Fe-ADH
AAA_22
Motif
Other DBs
NCBI-ProteinID:
AQV95116
UniProt:
A0A1U9UQT8
LinkDB
All DBs
Position
1:complement(3173744..3175249)
Genome browser
AA seq
501 aa
AA seq
DB search
MTTTNAPEPTTAAGQTAVQTFESFGLDARILRALSDQGYTTPTPIQAQAIPVVLLGKDVM
GAAQTGTGKTAGFALPIIQRLLPLANASASPARHPVRALMLTPTRELADQVYDNVARYAQ
HTDLRSTVVFGGVDMNPQTDALRRGVEILVATPGRLLDHVQQKSVNLSQVQMLVLDEADR
MLDMGFLPDLQRIINLLPAQRQTLLFSATFSPEIKRLASSYLKHPVTIEVARSNSTNENV
RQMVYQVEDGHKQAAVVHLLKQRAEQGLSRQCIVFVNSKIGCSRLARHLEREGVNAAAIH
GDKTQTERMQTLDGFKSGTIDALVATDVAARGLDIPSMPCVINFDVPYSAEDYVHRIGRT
GRAGASGDALSIYVPGNDERLLSDIEKLIKRSIPRGKLEGFDPTGERARQADTERRRERG
DVRRARGNGEGEERPRRHDHSANRQVFRASDDPFFSRPYEPSAASIAQANAADEVAAALT
RGRQAPKRPVAALLGGVPRKS
NT seq
1506 nt
NT seq
+upstream
nt +downstream
nt
atgaccactacgaacgcaccagaacctaccaccgccgcagggcagaccgccgttcagaca
ttcgaaagcttcggtctggacgcgcgcatcctgcgcgccttgtccgaccagggctacacc
acccccacgccgatccaggcgcaggccatcccggtcgtgctgctgggcaaggacgtgatg
ggcgccgcgcagaccggcaccggcaagaccgcgggctttgcgctgccgatcatccagcgc
ctgctgccgctggccaatgccagcgcctcgccggcacgccatccggtgcgcgcgctgatg
ctgacccctacgcgcgagctggccgaccaggtctacgataacgttgcccgctacgcccag
cacaccgacctgcgcagcaccgtggtgttcggcggcgtggacatgaacccgcagaccgac
gccctgcgccgcggcgtggaaatcctggtggccacgcccggccgcctgctggaccacgtg
cagcagaagtcggtcaacctgtcgcaggtgcagatgctggtgctggacgaagccgaccgc
atgctcgacatgggcttcctgccggacctgcagcgcatcatcaacctgctgccggcgcaa
cggcagacgctgctgttctcggccacgttctcgccggaaatcaagcggcttgcgtcgagc
tacctgaagcacccggtcaccatcgaggtggcgcgcagcaattcgaccaacgagaacgtg
cgccagatggtgtaccaggtcgaagacggccacaagcaggcggcggtcgtgcacctgctg
aagcagcgtgcggagcaggggctgtcgcgtcagtgcatcgtcttcgtcaacagcaagatc
ggctgctcgcgcctggcgcggcacctggagcgcgaaggcgtcaatgccgccgccatccac
ggcgacaagacccagaccgagcgcatgcagacgctggacggcttcaagagcggcaccatc
gacgcgctggttgccaccgacgtggccgcgcgcgggctggatattccctccatgccctgc
gtgatcaatttcgacgtgccgtacagcgccgaagactacgtgcaccgcatcggccgcacc
ggccgtgccggcgccagcggcgatgcgctgtcgatctacgtgccgggcaacgacgagcgc
ctgttgtccgatatcgagaagctgatcaagcgcagcatcccgcgcggcaagctggaaggc
ttcgacccgaccggcgagcgtgcgcgccaggccgacaccgagcgccgccgcgagcgtggc
gacgtgcgccgcgcgcgcggcaacggcgagggcgaggagcgtccgcgccgccacgaccac
agcgccaaccgccaggtgttccgtgcctcggacgatccgttcttctcgcgtccgtacgag
cccagcgcagccagcatcgcgcaggcgaatgcggccgacgaagtggccgccgcgctgacc
cgcgggcgtcaggcgcccaagcggccggtggcggcattgctgggcggcgtgccccgcaag
tcctga
DBGET
integrated database retrieval system
