Cupriavidus necator NH9: BJN34_14680
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Entry
BJN34_14680 CDS
T05121
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
cuh
Cupriavidus necator NH9
Pathway
cuh02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
cuh00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
BJN34_14680
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cuh03021
]
BJN34_14680
Transcription machinery [BR:
cuh03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
BJN34_14680
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r1_1
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
SPO22
Motif
Other DBs
NCBI-ProteinID:
AQV95122
UniProt:
A0A1U9UR08
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All DBs
Position
1:complement(3181236..3183788)
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AA seq
850 aa
AA seq
DB search
MAKAKATERVTSNAPQSGSGKASVKTTAAKTSTASVRTPARSAPSKSVRSAQAPAETTPT
RTRTSEKTKASTSARESGKSASTSGKVAASAPVKGKSITVAKQQNTEVESKRAAAAGAKS
GEAKAGTATTATKARAATPASVASERPAAPAIKPEPKKRGRKPKAEMQHDDSTTDDVTEE
FYENGTRAAATPAAAPKTEKQKAKDRKAKEKALLKEFASTQQGTEEELELRRQKLKALIK
LGKSRGYLTYAEINDHLPDDMVDSETIDTLVATLNDIGIAVYEQAPDAETLLLNDNAPSA
TSEEEAEEEAEAALSTVDSEFGRTTDPVRMYMREMGTVELLTREGEIEIAKRIEAGLKDM
VMAISACPVTISEILAHAERVANDEIKIDEFVDGLIDPNAEEVAESPAAAAAPAADEDLE
SDDDEEADEDDDDEGGAGAGASARQLEELKQNALEKFRVIAEQFDKMRRAFEKEGYKSKP
YVKAQEAIQAELMGIRFTARNVERLCDTLRGQVDEVRKLERAILNTIVDKCGMPRADFVA
RFPGNETNLEWVHTVIADGKPYSTIVERNVPAVHELQQKLIDLQSRVVLPLKELKDVNRK
MAEGERRAREAKREMTEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRG
YKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKMNRISRQILQETGNEPDPATLA
EKMEMPEDKIRKIMKIAKEPISMETPIGDDDDSHLGDFIEDTNTLAPAEAALHGSMRDVV
KDVLDSLTPREAKVLRMRFGIEMSTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRS
DKLKSFLEGN
NT seq
2553 nt
NT seq
+upstream
nt +downstream
nt
atggcaaaggccaaagcaaccgaaagggttacctccaatgctccccaatcagggagcggc
aaggcgtctgtgaaaacaacggcggcgaagacatcgaccgcgtcagtcaggacaccggcc
cggtctgcgccatcaaagtccgtgcgtagcgcgcaagcgcccgccgagacgactcccacc
aggacccgcacatccgaaaagacaaaggcctcgacttcggcacgcgagagcggcaagagc
gccagtacgagcggcaaggtcgccgcgtctgcaccagtgaaaggcaagagtatcaccgtg
gcgaaacagcagaataccgaagtcgagagcaagcgagcggcagccgccggcgccaagagt
ggggaggccaaggctggcaccgccaccacggcaaccaaggcgcgtgccgcgacacctgca
tccgttgcatccgagcgtcccgctgcaccggcaatcaagccggagccgaaaaagcgtggc
cgcaagcccaaggccgagatgcagcacgacgacagcacaacagacgacgtgactgaagag
ttttacgagaacggtacgcgcgcggcggcaacaccagccgcggcgccgaagaccgaaaag
cagaaggccaaggaccgcaaggccaaggaaaaggcgctgctcaaggagttcgcctcgacc
cagcagggcactgaggaagagcttgaactgcgtcgccagaaactcaaggcgctgatcaag
ctgggcaagtcgcgcggctacctgacctacgcggaaatcaacgatcacctgccggacgac
atggtcgattcggaaacgatcgacacgctggtcgccacgctgaacgacatcggtatcgct
gtctatgaacaggcgcccgatgccgagacgttgctgctcaacgacaacgccccgtccgcc
accagcgaggaagaagccgaggaagaggccgaggcggccctgtccacggtggactccgag
ttcggccgcaccaccgacccggtgcgcatgtacatgcgcgaaatgggcacggtcgagctg
ctcacgcgcgaaggcgaaatcgagattgccaagcgcatcgaggccggcctgaaggacatg
gtgatggcgatttcggcttgcccggtcaccatctccgagatcctggcccatgccgagcgc
gtggccaacgacgagatcaagatcgacgaattcgtcgacggcctgatcgacccgaacgcc
gaggaagtggccgagtccccggctgcggccgccgcgcccgccgctgacgaagacctcgag
tccgacgacgacgaagaggccgacgaggacgacgacgatgaaggcggcgccggtgccggt
gcctccgcgcgccagcttgaagaactgaagcagaacgcgctggagaaattccgcgtgatc
gccgagcagttcgacaagatgcgccgtgcattcgagaaggaaggctacaagtccaagcct
tacgtcaaggcgcaggaagccatccaggccgagctgatgggcatccgcttcaccgcccgc
aacgtcgagcgcctgtgcgacacgctgcgcgggcaggtggacgaagtgcgcaagctcgag
cgtgccattctgaacaccatcgtggacaagtgcggcatgccgcgcgcggatttcgtggcc
cgcttcccaggcaacgagaccaacctcgagtgggttcacaccgtgatcgccgacggcaag
ccgtacagcaccatcgtcgagcgcaacgtgccggccgtgcatgagctgcagcagaagctg
atcgacctgcagtcgcgcgtggtgctgccgctgaaggaactgaaggacgtcaaccgcaag
atggccgaaggcgagcggcgcgcccgcgaagccaagcgcgagatgaccgaggccaacctg
cgcctggtgatctcgatcgccaagaagtacaccaaccgcggcctgcagttcctcgacctg
atccaggaaggcaatatcggcctgatgaaggcggtggacaagttcgaataccgccgcggc
tacaagttctcgacgtacgccacgtggtggatccgccaggccatcacgcgctcgatcgcc
gaccaggctcgcaccatccgtatcccggtgcacatgatcgagacgatcaacaagatgaac
cgcatctcgcgccagatcctgcaggaaaccggcaatgagccggatccggcaacgctggcg
gagaagatggagatgccggaagacaagatccgcaagatcatgaagatcgccaaagagccg
atctccatggaaacgccgatcggtgacgacgacgactcccatctgggcgacttcatcgag
gacaccaacacgctggccccggccgaagcggcactgcacggctccatgcgcgacgtcgtc
aaggacgtgctggactcgctcacgccgcgcgaagccaaggtgctgcgcatgcgcttcggc
atcgaaatgagcaccgaccacacgctggaagaggtcggcaagcagttcgacgtcacgcgt
gaacggatccgccagatcgaggccaaggcactgcgcaagctgcgccacccgagccgctcg
gacaagctgaagagcttcctggaaggcaactaa
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