Cupriavidus necator NH9: BJN34_18710
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Entry
BJN34_18710 CDS
T05121
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
cuh
Cupriavidus necator NH9
Pathway
cuh03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
cuh00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
BJN34_18710
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cuh03021
]
BJN34_18710
03400 DNA repair and recombination proteins [BR:
cuh03400
]
BJN34_18710
Enzymes [BR:
cuh01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
BJN34_18710
Transcription machinery [BR:
cuh03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
BJN34_18710
DNA repair and recombination proteins [BR:
cuh03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
BJN34_18710
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
BSH_YknX
Apocytochr_F_C
Peptidase_M23
Motif
Other DBs
NCBI-ProteinID:
AQV95915
UniProt:
A0A1U9UUT0
LinkDB
All DBs
Position
1:complement(4036897..4041141)
Genome browser
AA seq
1414 aa
AA seq
DB search
MKALLDLFKQVQQEEQFDAIKIGLASPEKIRSWSYGEVKKPETINYRTFKPERDGLFCAK
IFGPIKDYECLCGKYKRLKHRGVICEKCGVEVTLAKVRRERMGHIELAAPTAHIWFLKSL
PSRLGMVLDMTLRDIERVLYFEAFVVLEPGMTPLKKSQIMSEDDYLAKCDEYGEGEFVAM
MGAEGIRELLRGIDIEKQIEQIRAELQATGSEAKIKKFAKRLKVLEAFQRSGIKPEWMIL
EVLPVLPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLELKAPEIIVRNEKRML
QEAVDSLLDNGRRGKAMTGANKRPLKSLAEMIKGKGGRFRQNLLGKRVDYSGRSVIVVGP
TLKLHQCGLPKLMALELFKPFIFHKLETMGIATTIKAAKKEVESQTPVVWDILEEVIREH
PVMLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAFNADFDGDQMAVHVPLSLEAQME
ARTLMLASNNVLFPANGDPSIVPSQDVVLGLYYTTRDKINGRGEGMTFADISEVIRAYEN
KEVELASRVNVRITEYELVDKDAEGDARFAPKITLQATTVGRAILSEILPKGLPFSVLNK
PLKKKEISRLINTAFRKCGLRETVIFADKLLQSGFRLATRAGISIAIDDMLVPPQKEKII
AEASAKVKEYDKQYMSGLVTDQERYNNVVDIWGAAGDQVGKAMMEQLQHEDVVDREGKTV
KQESFNSIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFI
STHGARKGLADTALKTANSGYLTRRLVDVTQDLVVVEDDCGTTNGVAMKALVEGGEVIEA
LRDRILGRVTVADVVNPETQETAIEAGTLLDEDLVEMIDAIGVDEVKVRTPLSCDTRYGL
CGKCYGRDLGRGVLVNSGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASRAAVASSVEAKA
TGTVRFTVTMRYVTNAKGELIVISRSGEALITDDHGRERERHKIPYGATLLVQDGQAIKA
GTQLATWDALTRPIVSEYTGTTKFENVEEGVTVAKQMDEVTGLSTLVVIDAKRRTAATKG
IRPQVKLLDAAGQEVKIPGTDHSVTIGFQVGALITVKDGQQVHVGEVLARIPTESQKTRD
ITGGLPRVAELFEARSPKDAAVLAEVTGTTSFGKDTKGKQRLVITDLDGNAHEFLIAKEK
QVLVHDGQVVNKGEMIVEGPADPHDILRLKGIEELAHYIVDEVQDVYRLQGVKINDKHIE
VIVRQMLRRVQIADVGDTKFIPGEQVERSELLDENDRVIAEGKRPATYENLLLGITKASL
STDSFISAASFQETTRVLTEAAIMGKTDDLRGLKENVIVGRLIPAGTGLAYHRARKAREA
SERERAQAIAEEEQSLFIEPAPVVQATEGEGDNV
NT seq
4245 nt
NT seq
+upstream
nt +downstream
nt
atgaaagcattgctcgatctctttaagcaggtacagcaggaagagcagttcgacgcgatc
aagatcggcctggcctcgcccgagaagatccgttcgtggtcgtacggcgaagtcaagaag
ccggaaacgatcaactaccgtacgttcaagccggaacgcgacggcctgttctgcgccaag
atctttggcccgatcaaggactacgagtgcctgtgcggcaagtacaagcgcctgaagcac
cgtggcgtgatctgcgagaagtgcggcgttgaagtgacgctggccaaggtgcgccgcgag
cgcatgggccacatcgaactggccgcgccgaccgcgcacatctggttcctgaagtcgctg
ccgtcgcgcctgggcatggtcctggacatgacgctgcgcgacatcgagcgcgtgctgtac
tttgaagcattcgtggtgctcgaacccggcatgaccccgctcaagaagagccagatcatg
tccgaagacgactacctcgcgaagtgcgacgagtacggcgagggcgagttcgtcgccatg
atgggtgccgagggcatccgtgaactgctgcgcggcatcgacatcgagaagcagatcgaa
cagatccgcgccgagctgcaggccaccggttccgaagccaagatcaagaagttcgccaag
cgcctgaaggtgctcgaggccttccagcgttcgggcatcaagcccgagtggatgatcctc
gaagtgctgccggtgctgccgcccgagctgcgtccgctggtgccgctggacggcggccgc
tttgcgacctcggacctgaacgacctgtatcgccgcgtcatcaaccgtaacaaccgtctg
aagcgcctgctggagctgaaggcgcctgagatcatcgtgcgcaacgaaaagcgcatgctg
caggaagcggttgactcgctgctggacaacggccgtcgcggcaaggcgatgaccggtgcc
aacaagcgtccgctgaagtccctggccgaaatgatcaagggcaagggcggccgtttccgt
cagaacctgctgggcaagcgcgtcgactactcgggccgttcggtcatcgtggtgggcccg
acgctcaagctgcaccagtgcggcctgcccaagctgatggcgctcgagctgttcaagccg
ttcatcttccacaagctggaaacgatgggcatcgccaccaccatcaaggcggcgaagaag
gaagtcgaaagccagaccccggtggtgtgggacatccttgaagaggtgatccgcgagcac
ccggtgatgctgaaccgtgcgccgacgctgcaccgcctgggtatccaggcgttcgagccg
gtgctgatcgaaggcaaggccatccagttgcacccgctggtctgcgcggcgttcaacgcc
gacttcgacggtgaccagatggctgtccacgtcccgctgtcgctggaagcgcagatggaa
gcccgcaccctgatgctggcctccaacaacgtgttgttcccggccaacggcgacccgtcg
atcgtgccgtcgcaagacgtggtgctgggcctgtactacacgacccgcgacaagatcaac
ggccgcggcgagggcatgacctttgccgacatcagcgaagtgatccgcgcctacgagaac
aaggaagtcgaactggcttcgcgcgtgaacgtgcgtatcaccgagtatgagctggtcgac
aaggacgccgaaggcgatgcccgtttcgcacccaagatcacgctgcaggccaccacggtc
ggccgcgcgatcctgtccgagatcctgcccaagggcctgccgttctcggtgctgaacaag
ccgctgaagaagaaggaaatctcgcgcctgatcaacaccgcgttccgcaagtgcggcctg
cgcgagaccgtgatcttcgccgacaagctgctgcagtcgggcttccgcctggctacccgc
gctggtatctcgatcgccatcgacgacatgctggtgccgccgcagaaggaaaagatcatc
gccgaggcttcggccaaggtgaaggaatacgacaagcagtacatgtcgggtctggtgacc
gaccaggaacgctacaacaacgtcgtggacatctggggcgccgccggcgaccaggtgggc
aaggcgatgatggagcagctccagcacgaagacgtggtcgaccgcgaaggcaagaccgtg
aagcaagagtcgttcaactccatctacatgatggccgactcgggcgcacggggctcggcc
gcgcagatccgccagctggccggtatgcgtggcctgatggccaagccggatggctcgatc
attgaaacgccgattacggcgaacttccgtgaaggcctgaacgttctgcagtacttcatc
tcgacccacggcgcccgtaagggcctggccgatacggcactgaagaccgcgaactcgggt
tacctgacccgtcgtctggtcgacgtgacgcaggatctggtcgtggtcgaagacgattgc
ggcaccaccaacggcgtggccatgaaggccctggtcgaaggcggtgaagtgatcgaagcc
ctgcgcgaccgtatcctcggccgcgtgaccgtggccgacgtggtgaacccggaaacccag
gaaaccgcgatcgaagccggcacgctgctggacgaagacctggtcgagatgatcgacgcg
atcggcgtggacgaagtcaaggtccgcaccccgctgtcgtgcgacacgcgctacggcctg
tgcggcaagtgctacggccgcgacctgggccgcggcgtgctggtgaactccggcgaagcg
gtgggcgtgattgccgcgcagtcgatcggtgagccgggcacgcagctgaccatgcgtacg
ttccacatcggtggtgcggcatcgcgtgcggcagtggcatcgagcgtggaggccaaggca
accggtaccgtgcgtttcacggtgaccatgcgttacgtgaccaatgcgaagggcgaactg
atcgtcatctcgcgttcgggcgaggcgctgatcaccgacgaccacggccgcgagcgcgag
cgccacaagatcccgtacggcgccacactgctggtgcaggacggccaggccatcaaggct
ggcacgcagctggccacgtgggacgcgctgacccgcccgatcgtttcggaatacaccggt
acgaccaagttcgagaacgtcgaagaaggcgtgaccgtcgccaagcagatggacgaagtg
acgggcctgtcgaccctggtggtgatcgacgccaagcgccgcacggccgccaccaagggc
atccgcccgcaggtgaagctgctcgacgccgccggccaggaagtgaagatcccgggcacg
gaccactccgtgaccatcggcttccaggtcggcgcgctgatcacggtgaaggacggccag
caggtgcacgtgggtgaagtgctcgcgcgtatcccgaccgaatcgcagaagacccgcgac
attaccggtggtctgccgcgtgtggccgagctgttcgaagcgcgttcgccgaaggatgcc
gccgtgctggcggaagtcaccggcacgacctcgttcggcaaggacaccaagggcaagcag
cgcctggtcatcaccgacctggacggcaatgcccacgagttcctgatcgcgaaggaaaag
caggtgctggtgcacgacggccaggtggtgaacaagggcgaaatgatcgtggaaggtccg
gcggacccgcacgacatcctgcgcctgaagggcatcgaagagctggcgcactacatcgtg
gacgaagtccaggacgtgtaccgtctgcaaggcgtgaagatcaacgacaagcacatcgag
gtgatcgttcgccagatgctgcgccgcgtccagatcgccgacgtgggcgacaccaagttc
atcccgggtgaacaggtggagcgttcggaactgctcgacgagaacgaccgcgtgatcgcc
gaaggcaagcgtccggccacgtacgagaacctgctgctcggtatcaccaaggcgtcgctg
tcgaccgacagcttcatctcggcggcatcgttccaggaaaccacgcgcgtgctgaccgaa
gccgcgatcatgggcaagaccgacgacctgcgtggtctgaaggaaaacgtgatcgtcggc
cgtctgatcccggccggtaccggcctggcctaccaccgcgcccgcaaggcgcgcgaggcc
tccgagcgcgaacgcgcccaggcgatcgccgaagaagagcagtcgctcttcatcgagccg
gcgccggtggtgcaggcgaccgagggtgaaggcgacaacgtctga
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