KEGG   Cupriavidus necator NH9: BJN34_21270
Entry
BJN34_21270       CDS       T05121                                 
Name
(GenBank) DUF559 domain-containing protein
  KO
K03654  ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
Organism
cuh  Cupriavidus necator NH9
Pathway
cuh03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:cuh00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    BJN34_21270
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:cuh03019]
    BJN34_21270
   03400 DNA repair and recombination proteins [BR:cuh03400]
    BJN34_21270
Enzymes [BR:cuh01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     BJN34_21270
Messenger RNA biogenesis [BR:cuh03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Helicases
     BJN34_21270
DNA repair and recombination proteins [BR:cuh03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     Supressor
      BJN34_21270
SSDB
Motif
Pfam: DEAD DUF559 MTES_1575 DUF2726 ResIII
Other DBs
NCBI-ProteinID: AQV96402
UniProt: A0A1U9UUQ9
LinkDB
Position
2:279191..281017
AA seq 608 aa
MTTNLSRLSALPQFLKASEFWDGVLDPRISIDEGERFGRFRELSSAHAWGLQLPEARFEA
PSGTELTAIEIGLGLLQRGAWTHCSWLVEQALARLMFDAKLVSLEAVPAASGVLGFTARL
LDSRALRYALATGRLPAEVKQDDAAHIWDSAVRELGGSVGSGAERQFFTEVLVPTLGFPL
LDYLRFQAELTELGLDSASFAAQRTDFSINTGRGLRLVIEVDGPEHLVPQQQLLDKKRDA
ALHKAGWEVWRVPVASLQNPDMLRNQLQSRIQSTRGGRWGWQLGDVALRTREASSCVWGA
TVIARIQFLLLVAMQNGGLSSDREWLLSISERETDVAQLAVEDFLDWFGRLRQLYGLSVL
PGVRLARAGESDVDLAISITCTNPWEEEPSVRGPRAWSRPANTWVPEPSVKFSNSEYLSR
APDGSLLESFARDLFRKAFFREGQLAILERILQGKDVVGLLPTGGGKSLTYQLAALLLPG
ATLYVAPLKSLLEDQYERFKVDGVDACGFISSALDIGQKIEQEQRFTAGQMRMLQVAPER
FLMQGFRALLDTYAATLGPVSLVVVDECHCVSEWGHEFRPAYLRATLNKPGELGVQADNN
VLGQENWL
NT seq 1827 nt   +upstreamnt  +downstreamnt
atgactacgaatctcagtcgcctgtccgcgttgccgcagttcctgaaagctagcgaattc
tgggatggcgttctcgacccgcgtatctccatcgacgaaggtgaacgctttggccggttt
agggagctgtcatcagctcacgcctgggggctgcaactgcccgaggcaagatttgaagcc
ccttccggcaccgagttgaccgcaatagagattgggctaggactgctgcagcggggggcg
tggacgcactgcagttggctggttgagcaagcgcttgctcgactaatgttcgacgccaag
ctggtcagcttggaagctgtcccggcagcttctggcgtacttggatttacggcgcggttg
ctcgattccagggctttgagatatgcacttgcgacgggccgacttccggcggaagtgaag
caggacgatgcggctcacatttgggactctgcggtgcgggaactgggcggcagtgtaggg
agcggcgcagaacgccagttttttaccgaggttttggtgccaacccttggattccccctg
cttgattatttgcggttccaggcagaactgacggagttgggcttggactcggcaagtttt
gctgcccagcgcactgatttctcaattaataccggccgtggtctgcggctggttatcgaa
gtcgatggccctgagcacctggttccacagcagcaacttctcgacaagaagcgggacgca
gcgctgcataaagccggttgggaggtttggcgagtacccgtagcgagcctgcagaatcct
gacatgcttcgcaaccagctgcaaagtcggattcagtcgacgcgcggaggaaggtggggg
tggcagctcggggatgtcgcgcttcgaacccgggaggcatcttcctgtgtatggggcgcg
acggtcattgctcgcatccagtttctcctcctcgtagccatgcaaaacggaggcctatct
tcagaccgagagtggctgctgtcaatttcagaaagagaaaccgacgtagcgcaactagcg
gtagaggactttcttgactggtttggccgccttcggcagctctatggactgtctgttctg
ccgggggtgcgattggctagggctggcgaatcggacgttgaccttgcaatttcaatcacc
tgtacaaatccttgggaggaagagcctagtgtgcgaggcccacgggcttggtccaggccg
gccaacacgtgggttcccgaaccaagcgtgaaattctccaattcggagtatctaagccgc
gctccggacggttccctgcttgagtcgttcgcgcgggacctatttcggaaggcattcttt
cgggaaggccagcttgccattctcgagcgtatcctccaaggcaaggatgtggtagggctc
ttgccgacaggagggggtaagagcctgacctatcagcttgccgctctgttgctgccaggg
gccacgctttacgtggcaccgctgaaatcgctgctggaggaccaatatgaacgattcaag
gtcgacggggtggatgcgtgcggatttatttcgagcgcgctggatatcggacaaaaaata
gaacaggagcagcgctttaccgcaggacaaatgcggatgcttcaggtggctcccgagcgg
ttcttaatgcagggcttccgggctttgctggatacctacgcggccaccctgggtccggta
agcctggttgtggtcgatgaatgtcattgcgtaagtgaatgggggcatgaatttcgcccg
gcgtaccttagggctacgctgaacaagccgggtgaattgggcgttcaggcggataacaac
gtgctcggtcaggaaaattggctctga

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