Cupriavidus necator NH9: BJN34_21270
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Entry
BJN34_21270 CDS
T05121
Name
(GenBank) DUF559 domain-containing protein
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
cuh
Cupriavidus necator NH9
Pathway
cuh03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cuh00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BJN34_21270
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cuh03019
]
BJN34_21270
03400 DNA repair and recombination proteins [BR:
cuh03400
]
BJN34_21270
Enzymes [BR:
cuh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
BJN34_21270
Messenger RNA biogenesis [BR:
cuh03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
BJN34_21270
DNA repair and recombination proteins [BR:
cuh03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
BJN34_21270
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
DUF559
MTES_1575
DUF2726
ResIII
Motif
Other DBs
NCBI-ProteinID:
AQV96402
UniProt:
A0A1U9UUQ9
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All DBs
Position
2:279191..281017
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AA seq
608 aa
AA seq
DB search
MTTNLSRLSALPQFLKASEFWDGVLDPRISIDEGERFGRFRELSSAHAWGLQLPEARFEA
PSGTELTAIEIGLGLLQRGAWTHCSWLVEQALARLMFDAKLVSLEAVPAASGVLGFTARL
LDSRALRYALATGRLPAEVKQDDAAHIWDSAVRELGGSVGSGAERQFFTEVLVPTLGFPL
LDYLRFQAELTELGLDSASFAAQRTDFSINTGRGLRLVIEVDGPEHLVPQQQLLDKKRDA
ALHKAGWEVWRVPVASLQNPDMLRNQLQSRIQSTRGGRWGWQLGDVALRTREASSCVWGA
TVIARIQFLLLVAMQNGGLSSDREWLLSISERETDVAQLAVEDFLDWFGRLRQLYGLSVL
PGVRLARAGESDVDLAISITCTNPWEEEPSVRGPRAWSRPANTWVPEPSVKFSNSEYLSR
APDGSLLESFARDLFRKAFFREGQLAILERILQGKDVVGLLPTGGGKSLTYQLAALLLPG
ATLYVAPLKSLLEDQYERFKVDGVDACGFISSALDIGQKIEQEQRFTAGQMRMLQVAPER
FLMQGFRALLDTYAATLGPVSLVVVDECHCVSEWGHEFRPAYLRATLNKPGELGVQADNN
VLGQENWL
NT seq
1827 nt
NT seq
+upstream
nt +downstream
nt
atgactacgaatctcagtcgcctgtccgcgttgccgcagttcctgaaagctagcgaattc
tgggatggcgttctcgacccgcgtatctccatcgacgaaggtgaacgctttggccggttt
agggagctgtcatcagctcacgcctgggggctgcaactgcccgaggcaagatttgaagcc
ccttccggcaccgagttgaccgcaatagagattgggctaggactgctgcagcggggggcg
tggacgcactgcagttggctggttgagcaagcgcttgctcgactaatgttcgacgccaag
ctggtcagcttggaagctgtcccggcagcttctggcgtacttggatttacggcgcggttg
ctcgattccagggctttgagatatgcacttgcgacgggccgacttccggcggaagtgaag
caggacgatgcggctcacatttgggactctgcggtgcgggaactgggcggcagtgtaggg
agcggcgcagaacgccagttttttaccgaggttttggtgccaacccttggattccccctg
cttgattatttgcggttccaggcagaactgacggagttgggcttggactcggcaagtttt
gctgcccagcgcactgatttctcaattaataccggccgtggtctgcggctggttatcgaa
gtcgatggccctgagcacctggttccacagcagcaacttctcgacaagaagcgggacgca
gcgctgcataaagccggttgggaggtttggcgagtacccgtagcgagcctgcagaatcct
gacatgcttcgcaaccagctgcaaagtcggattcagtcgacgcgcggaggaaggtggggg
tggcagctcggggatgtcgcgcttcgaacccgggaggcatcttcctgtgtatggggcgcg
acggtcattgctcgcatccagtttctcctcctcgtagccatgcaaaacggaggcctatct
tcagaccgagagtggctgctgtcaatttcagaaagagaaaccgacgtagcgcaactagcg
gtagaggactttcttgactggtttggccgccttcggcagctctatggactgtctgttctg
ccgggggtgcgattggctagggctggcgaatcggacgttgaccttgcaatttcaatcacc
tgtacaaatccttgggaggaagagcctagtgtgcgaggcccacgggcttggtccaggccg
gccaacacgtgggttcccgaaccaagcgtgaaattctccaattcggagtatctaagccgc
gctccggacggttccctgcttgagtcgttcgcgcgggacctatttcggaaggcattcttt
cgggaaggccagcttgccattctcgagcgtatcctccaaggcaaggatgtggtagggctc
ttgccgacaggagggggtaagagcctgacctatcagcttgccgctctgttgctgccaggg
gccacgctttacgtggcaccgctgaaatcgctgctggaggaccaatatgaacgattcaag
gtcgacggggtggatgcgtgcggatttatttcgagcgcgctggatatcggacaaaaaata
gaacaggagcagcgctttaccgcaggacaaatgcggatgcttcaggtggctcccgagcgg
ttcttaatgcagggcttccgggctttgctggatacctacgcggccaccctgggtccggta
agcctggttgtggtcgatgaatgtcattgcgtaagtgaatgggggcatgaatttcgcccg
gcgtaccttagggctacgctgaacaagccgggtgaattgggcgttcaggcggataacaac
gtgctcggtcaggaaaattggctctga
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