Cronobacter universalis: AFK65_07680
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Entry
AFK65_07680 CDS
T04063
Symbol
rne
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
cui
Cronobacter universalis
Pathway
cui03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cui00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AFK65_07680 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cui03019
]
AFK65_07680 (rne)
03009 Ribosome biogenesis [BR:
cui03009
]
AFK65_07680 (rne)
Enzymes [BR:
cui01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
AFK65_07680 (rne)
Messenger RNA biogenesis [BR:
cui03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
AFK65_07680 (rne)
Ribosome biogenesis [BR:
cui03009
]
Prokaryotic type
rRNA processing factors
AFK65_07680 (rne)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
PNPase_C
S1
Motif
Other DBs
NCBI-ProteinID:
ALB54548
UniProt:
A0AAC8ZR93
LinkDB
All DBs
Position
complement(1681805..1684972)
Genome browser
AA seq
1055 aa
AA seq
DB search
MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY
GAERHGFLPLKEIAREYFPASYASHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFI
SLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALSSLELPDGMGLIVRTAGVGKSAEAL
QWDLSFRLKHWEAIQKAAENRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELA
RQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDTTEALT
AIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVE
NRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTIRDNESLS
LSILRLIEEEALKENTQEVHAIVPVPIASYLLNEKREAITAIETRQGGVRCVIVPNDQME
TPHYSVLRVRKGEETHTLSYMLPKLHEEAMALPSEDEYAERKRPEQPALATFVMPDVPPV
PQETAAPKAETAAPKAPVKAAEPAKEGFLSRAISALKSLFASEPQAQPVASEPEQQPAKN
RDEKQQDRRNGRRQNNRRDRNDRGDRSERGERPSRDNRDNRDNSEAREENRRNRREKQQQ
NAEAREARAPVAEDAAEKPKSRDEQQQSPRRDRNRRRSEEKRQAQQEVNVLNRDEAVEET
EQEDRVVQVMPRRKPRQLSQKVRIESAAEAAAVGTADAPVAEPREEAAPLALPANVETPA
VAEETNQTGSENAGMPRRSRRSPRHLRVSGQRRRRYRDERYPTQSPMPLTVACASPEMAS
GKVWIRYPLPRVQEQEEQQLEQNTAPVAEAQTPEAPVAPVAEAVVVEPSVVESAPQEPVV
ETTHPEAISAPVDAEPQDQAVAEQIAQEAVPADAAVVADEAPREEASAVMAESAPAQEAL
PEAIADEPVKAPEAAPVVAPKAQEDDVKAPVVAVASAAVASAPMTRAPAPEYVPEPPRHS
DWVRPAFEFSGKGSAGGHSATHQASAPATRPQPVK
NT seq
3168 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagaatgctaattaacgcaactcagcaggaagagttgcgcgtcgccctcgtggat
gggcaacgtctgtacgacctggatatcgaaagtcctgggcacgagcagaaaaaagcgaac
atctacaaaggcaaaatcacccgcattgaacccagtctcgaagccgcatttgtggattat
ggcgccgaaagacacggtttcctccccttaaaagaaatcgcccgcgaatacttccccgcc
agctacgcctctcatggtcgtccgaatattaaagatgtcctgcgcgaaggccaggaagtc
atcgttcagatcgacaaagaagagcgtggcaacaaaggcgcagcgctgactacctttatc
agcctcgcgggcagctacctcgtgctgatgccgaacaacccgcgcgcgggcggcatctcc
cgtcgtatcgaaggcgacgatcgcaccgagcttaaagaagcgctttcaagcctggaactg
ccggatggcatggggcttatcgtgcgcaccgcaggcgtcggcaaatccgccgaagcgctg
cagtgggatttaagcttccgtctgaagcactgggaagccatccagaaagccgctgaaaac
cgcccggccccgttccttatccatcaggaaagtaacgttatcgtgcgcgcgttccgcgac
tatctgcgccaggacatcggcgaaatcctgatcgataacccgaaagtgcttgagctggcc
cgccagcacatcgccgcgctgggtcgtccggatttcagcagcaaaattaagctttacacc
ggtgaaatcccgctgttcagccactatcagatcgaatcccagattgagtctgccttccag
cgcgaagtgcgtctgccgtccggcggctcgattgttatcgacaccactgaagcgctgacc
gccatcgacatcaactccgcccgcgctacccgcggcggcgatatcgaagagacggcgttc
aacaccaacctggaagcggcggatgaaatcgcccgccagctgcgcctgcgcgatttaggc
ggtcttatcgttatcgactttatcgatatgacgccggtacgccaccagcgtgcggtagaa
aaccgtctgcgcgaagcggtgcgtcaggatcgcgcgcgcatccagattagccatatttcc
cgcttcggcctgcttgagatgtcccgtcagcgcctgagcccgtcgcttggcgaatccagc
catcacgtctgtccgcgatgtagcggcaccggcaccatccgcgataacgaatccctgtcg
ctctccattctgcgtctgattgaagaagaagcgctgaaagagaacacccaggaagttcac
gctatcgttccggtgcctatcgcctcctacctgcttaacgagaagcgtgaagcgattacc
gctatcgaaacgcgccagggcggcgtgcgctgcgtgatcgtgccgaacgatcagatggaa
accccgcactactccgttctgcgcgtgcgcaaaggcgaagagacgcacaccctgagctac
atgctgccgaagctgcatgaagaagcgatggcgctgccgtctgaagacgaatacgccgag
cgtaaacgtcctgagcagccggcgctcgccacgttcgtgatgccggacgtgccgccagtg
ccgcaggaaaccgcggcgccgaaagccgaaaccgcggcgccgaaagcgccggtcaaggcc
gccgagccagcgaaagaaggcttcctgagccgcgccatcagcgcgctgaagagcctgttc
gccagcgaaccgcaggcgcagcctgtcgcgagcgagccggagcagcagcctgccaaaaac
cgcgacgagaagcagcaggaccgccgtaacggtcgtcgtcagaacaaccgtcgcgaccgt
aacgaccgtggcgatcgcagcgaacgcggcgagcgtccgtcccgcgataaccgcgacaac
cgtgacaacagcgaagcgcgcgaagagaaccgccgtaaccgccgcgagaaacagcagcag
aacgccgaggcgcgtgaagcccgcgcgccggtcgccgaagacgccgctgagaagccgaaa
tcccgtgacgagcagcagcagtcgccgcgccgcgatcgcaaccgtcgtcgctctgaagag
aaacgtcaggcgcagcaggaagtcaatgtcctgaaccgtgatgaggccgtggaagagacc
gaacaggaagatcgcgttgttcaggtgatgccgcgccgtaagccgcgccagctgagccag
aaagtgcgtatcgaatccgcggccgaagcggctgccgtcggcaccgccgacgcgccggtc
gctgaaccgcgtgaagaggccgcgccgctggcgttgccggctaacgtggaaacgccagcc
gtcgccgaagagaccaaccagacgggcagcgaaaacgccggtatgccgcgtcgctcccgc
cgttctccgcgtcacctgcgcgtcagcggccagcgccgccgccgctaccgtgatgagcgt
tacccgacccagtcgccgatgccgctgactgtcgcgtgcgcgtcgccggagatggcgtcc
ggtaaagtctggatccgctacccgctgccgcgtgtacaggagcaggaggagcagcagctg
gagcagaacaccgcgccggtcgcagaagctcagacccctgaagcgccggttgcgccggtc
gccgaagcagtagtggttgagccgtcggttgtggagagcgcgccgcaggagcccgtggtg
gaaaccactcatcctgaagctatctccgcgccggttgacgccgagccgcaggatcaagcc
gtcgctgagcagatagcccaggaagccgttccggctgacgccgcggttgtcgctgacgaa
gcgcctcgcgaagaggcttccgctgtgatggccgaaagcgcgcctgcgcaggaggcgctg
ccggaagcgatcgctgatgagccggtgaaagccccggaagctgccccggtcgtcgcgccg
aaagcgcaggaagacgacgtgaaagcgccggtcgtggctgtcgcttccgccgccgtcgct
tctgcgccgatgacccgcgcaccggcgccggaatatgtgccggagccgccgcgtcacagc
gactgggttcgcccggcgttcgagttcagcggtaaaggttcggcgggcggccacagcgcc
acccatcaggcctctgcccctgcgacgcgtcctcagccggtgaagtaa
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