Cronobacter universalis: AFK65_17185
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Entry
AFK65_17185 CDS
T04063
Name
(GenBank) exoribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
cui
Cronobacter universalis
Pathway
cui03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cui00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AFK65_17185
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cui03019
]
AFK65_17185
03016 Transfer RNA biogenesis [BR:
cui03016
]
AFK65_17185
Enzymes [BR:
cui01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
AFK65_17185
Messenger RNA biogenesis [BR:
cui03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
AFK65_17185
Transfer RNA biogenesis [BR:
cui03016
]
Prokaryotic type
tRNA degradation factors
AFK65_17185
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
WHD_RNase_R
RNase_II_C_S1
Rho_RNA_bind
TFIIE_beta
Motif
Other DBs
NCBI-ProteinID:
ALB56309
UniProt:
A0AAC8VSX1
LinkDB
All DBs
Position
complement(3721783..3724251)
Genome browser
AA seq
822 aa
AA seq
DB search
MSHDPFQEREAEKYANPIPSREFILEHLTKREKPANRDELASELGIEGEEQLEALRRRLR
AMERDGQLVFTRRQCYALPERLDLQKGTVIGHRDGYGFLRVEGRKDDLYLSSEQMKTCIH
GDIVLAQPLGSDRKGRREARIVRVLVPKQSNIVGRYFTDAGVGFVVPDDSRLSFDILIPP
EEVMGARMGYVVVVELTQRPTRRTKAIGKIVEVLGDNMGTGMAVDMALRTHEIPYVWPKA
VEEQIAHLKEEVPEEAKVGRVDLRNLPLVTIDGEDARDFDDAVFCEKKRGGGWRLWVAIA
DVSYYVRPPTPLDNEARNRGTSVYFPSQVVPMLPEVLSNGLCSLNPQVDRLCMVCEMTIS
AKGRLTGYKFYEAVMSSHARLTYTKVWHILQGDEDLRSQYQPLVKHLEELHTLYKALEEA
RTERGGISFESEEAKFIFNAERRIDRIEQTQRNDAHKLIEECMILANISAARFVEKHKEP
ALFRIHDRPTNEAITSFRSVLAELGLELPGGNKPEPRDYAELLDSIADRPDHEMLQTMLL
RSMKQAIYDPENRGHFGLALQSYAHFTSPIRRYPDLTLHRAIKYLIAKEQGHEGNTTESG
GWHYTMEEMLQLGQHCSMTERRADEATREVADWLKCDFMQDQVGQTFSGVISSVTGFGFF
VRLTDLFIDGLVHVSSLDNDYYRFDQVGQRLIGESGGQTYRLGDRVEVKVEAVNMDERKI
DFSLISSERGPRNVGKTAREREKRGGGGGKNRSRRQVGKRQNFEPNEAFRSEKGRGKVKK
DSAARAEKSDKPAKSSKKPSAKTQKIAAATKAKRAAKKKRDE
NT seq
2469 nt
NT seq
+upstream
nt +downstream
nt
atgtcacacgatccttttcaggaacgagaagctgagaagtacgccaaccctatcccgagc
cgggaatttatccttgagcatttaaccaaacgtgaaaaaccggctaaccgcgatgaactg
gcgtccgaactcggcattgaaggcgaggagcagctggaagcgctgcgtcgccgcctgcgc
gccatggagcgcgacggccagttagtctttacccgccgccagtgctatgcgctgccggaa
cgtcttgatctgcaaaaaggcaccgtcatcggccatcgcgacggttacggttttttacgc
gtcgaaggacgcaaagacgatctctatctctcttctgagcagatgaaaacctgcattcac
ggcgatatcgtgctggcgcagccgctcggttcagaccgcaaaggccgccgcgaagcgcgc
atcgtacgcgtgctggtgccgaagcagagcaatattgtcgggcgctatttcaccgacgcg
ggcgtcggcttcgtggtgccggacgacagccgtctgagcttcgatatcctgatcccgccg
gaagaggtgatgggcgcccgcatgggctatgtcgtggttgtcgagctgacccagcgcccg
acgcggcgcaccaaagcgatcggtaaaattgttgaagtgctcggcgacaacatgggcacc
ggcatggccgtggatatggcgctgcgcacccatgaaatcccttacgtctggccgaaagcc
gttgaagaacagattgcgcacctgaaagaagaagtgccggaagaggccaaagtggggcgc
gtcgatttgcgcaatctgccgctcgtcaccatcgacggcgaagacgcccgcgactttgac
gacgccgtattctgtgagaaaaaacgcggcggcggctggcgcctgtgggtggctatcgcc
gacgtcagctactatgtgcgcccgccgacgccgcttgataacgaagcgcgcaaccgcggc
acgtcggtttacttcccgtcacaggtcgtcccgatgctgccggaagtgctctccaacggc
ctgtgctcgctgaacccgcaggtggatcgcctctgtatggtctgcgagatgaccatctcc
gccaaaggccgtctcactggctataaattctatgaagcggtgatgagctcgcacgcccgc
ctgacctacaccaaggtgtggcatattctccagggcgatgaagatctgcgcagccagtat
cagccgctggtgaagcatctcgaagagctgcacacgctgtataaagcgctggaagaggcg
cgcaccgagcggggcggcatctcgtttgagagcgaagaagcgaagtttatcttcaacgcc
gagcgccgtatcgatcgtattgagcagacccagcgtaacgacgcgcacaagctcatcgaa
gagtgcatgatcctcgccaacatctcggcggcgcgctttgtcgagaaacacaaagagccg
gcgctgttccgtattcacgaccgtccgaccaatgaagcgatcacctcgttccgctctgta
ctggcggagctgggccttgagctgccgggcggcaacaagccggagccgcgcgattacgcc
gagctgctcgattccatcgccgatcgtcccgatcacgagatgctgcaaaccatgctgctg
cgctcgatgaaacaggcgatttacgatccggaaaaccgcggccacttcggcctcgcgctg
caatcctacgcgcactttacctcgccgattcgccgctacccggatcttacgctgcaccgc
gcgattaaatacctgatcgccaaagagcagggtcacgaaggcaacaccaccgagagcggc
ggctggcactacaccatggaagagatgctgcaactgggccagcactgctccatgaccgaa
cgccgcgccgatgaagctacccgtgaagtggcggactggctgaagtgcgacttcatgcag
gatcaggtcggccagaccttctccggcgtgatttcaagcgtcaccggctttggattcttc
gtgcgcctgaccgatctctttatcgacggtctggtgcatgtctcgtcgctggataacgac
tactaccgctttgatcaggtcggccagcgtctgattggcgaatccggcggccagacgtat
cgtctgggcgaccgcgtcgaagtcaaagtcgaagcggttaacatggacgagcgcaaaatc
gatttctcgctcatctccagcgagcgcgggccgcgtaacgtgggtaaaaccgcacgcgag
cgcgagaaacgaggcggcggtggtggtaaaaaccgcagccgtcgtcaggtcggcaagcgc
cagaatttcgaacccaacgaggcgtttcgcagcgaaaaaggccgtggaaaggtgaagaaa
gacagcgcggcacgcgctgagaagagcgacaagccggcgaaaagcagtaaaaaaccgtcg
gcaaaaacgcagaaaatcgcggccgccaccaaagcgaagcgcgcggcgaagaaaaagcgc
gacgagtaa
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