Corynebacterium ulcerans 131002: CUL131002_0370
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Entry
CUL131002_0370 CDS
T03899
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
cuj
Corynebacterium ulcerans 131002
Pathway
cuj03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
cuj00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
CUL131002_0370 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cuj03021
]
CUL131002_0370 (rpoC)
03400 DNA repair and recombination proteins [BR:
cuj03400
]
CUL131002_0370 (rpoC)
Enzymes [BR:
cuj01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
CUL131002_0370 (rpoC)
Transcription machinery [BR:
cuj03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
CUL131002_0370 (rpoC)
DNA repair and recombination proteins [BR:
cuj03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
CUL131002_0370 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-ProteinID:
AKA95918
LinkDB
All DBs
Position
378757..382767
Genome browser
AA seq
1336 aa
AA seq
DB search
MIDVNFFDELRIGLATADDIRRWSKGEVKKPETINYRTLKPEKDGLFCERIFGPTRDWEC
ACGKYKRVRYKGIICERCGVEVTKSKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL
APKDLERIIYFAANIITGVDEEARHSDQTTLEAEMLLEKKDVEADAESEIAERAQKLEED
LAELEAAGAKADARNKVQKAADKEMQHIRERAEREIDRLEEIWQTFIKLAPKQMIIDETI
YEELVDRYEDYFTGGMGAEAIQTLIRNFDLDAEAEELREIINNGKGQKKMRALKRLKVVA
AFQRSGNDPAGMVLDCIPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRMIDL
GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK
RVDYSGRSVIIVGPQLKLHECGLPKLMALELFKPFVMKRLVENDYAQNIKSAKRMVERQR
PEVWDVLEEAISEHPVMLNRAPTLHRLGIQAFEPKLVEGKAIQLHPLACEAFNADFDGDQ
MAVHLPLSAEAQAEARILMLASNNILSPASGKPLAMPRLDMVTGLYYLTMDKTEDEIGGQ
GAYQPATETGPATGVYSSYAEALMARDRGVLGLQAKIQVRISHLRPPTDVEAEQFPEGWE
QGQTWLADTTLGRIMFNELLPWNYPYLEGVMVRKGGGSNKILLGDVINDLAATYPMITVA
QTMDKMKDAGFYWATRSGVTITMSDVLVLPNKEEILDRYEAEAAKIERKYWEQGALTERE
RYDRLVELWKEATDEVGNAVEKLYPDDNPIPMIVKSGAAGNMRQIWTLAGMKGMVVNSKG
DYITRPIKTSFREGLSVLEYFNNSHGSRKGLADTALRTADSGYLTRRLVDVAQDVIVRED
DCGTKQGIRVPLAVEVKDAQGNVTGYTGHSLIETSVAGRVASVDVKDSEGNVLVPAGENL
TDQLIEKLIAAGIAEVKVRSVLTCQTPTGVCAKCYGKSMATGKLVDIGEAVGIVAAQSIG
EPGTQLTMRTFHQGGVGGDITGGLPRVQELFEARVPKNRAPIASVAGTVHLEDEGNFYTL
TINPDDGSDVVVYEKLSKRQGLATVRVPMESNPGAMIERTLSEGDHVNVGDRLLRGPADP
HDVLEVLGRRGVEQHLVDEVQDVYRAQGVAIHDKHIEIIIRQMLRRGTVIESGSTEFLPG
TLVDLSEAKAANAEAIAAGGQPAELRSEIMGITKASLATESWLSAASFQETTRVLTDAAI
NKRSDKLIGLKENVIIGKLIPAGTGISRYRNISVKPTEAARNAAYSIPTYGDSIYGDDGY
GEFTGASVPLDEAYDL
NT seq
4011 nt
NT seq
+upstream
nt +downstream
nt
gtgatcgacgtcaacttcttcgacgagctccgcatcggcctggctaccgccgacgacatt
cgtcgttggtccaaaggcgaggtcaagaagccggagaccatcaactaccgcaccctgaag
ccggagaaggacggcctcttctgcgagcgaattttcggtccaacccgtgactgggagtgt
gcttgtggtaagtacaagcgcgtccgttataagggcatcatctgtgagcgctgtggcgtt
gaggtgaccaagtccaaggttcgtcgtgagcgcatgggccacatcgagctggctgcaccc
gtgacccacatttggtacttcaagggcgttccgtctcgtcttggctaccttttggacctg
gctccaaaggaccttgagcgcatcatctactttgctgccaacatcatcactggtgttgac
gaggaagctcgccacagcgaccagaccactcttgaggcagaaatgcttttggagaagaag
gacgttgaggctgacgctgagtctgagatcgcagagcgtgctcagaagctagaggaagac
ctcgctgagcttgaagcagcaggcgcaaaggctgacgctcgcaacaaggtgcaaaaggct
gcagacaaagagatgcagcacatccgcgagcgtgctgagcgcgagatcgaccgtcttgag
gagatctggcagacctttatcaagcttgctcctaagcagatgatcatcgacgagaccatc
tatgaagagctcgttgatcgctacgaggattacttcaccggtggcatgggtgcggaggct
atccaaacccttatccgcaacttcgacctcgacgctgaggcagaagagctgcgcgagatc
atcaacaacggcaagggtcagaagaagatgcgcgctctcaagcgcctcaaggtcgttgct
gcattccagcgctcgggcaatgacccagctggcatggtgctcgactgcattccggtgatc
ccgccggagctgcgcccgatggttcagcttgatggtggccgttttgctacctccgacttg
aacgatctctaccgtcgtgtgatcaaccgcaacaaccgcctcaagcgcatgatcgatctt
ggtgctcccgagatcatcgtgaacaacgagaagcgcatgctgcaggagtccgtcgacgcg
ctattcgacaacggccgtcgtggccgccctgtcactggtcctggcaaccgtcctctgaag
tccctgagcgatctgctcaagggtaagcagggtcgtttccgtcagaacctgctgggtaag
cgtgtcgattactctggtcgttccgttattatcgttggtccacagctgaagctgcacgag
tgcggtcttcctaagctcatggctcttgagctcttcaagccgtttgttatgaagcgcctc
gtggaaaacgattacgcgcagaacatcaagtcggctaagcgcatggttgagcgtcagcgc
cctgaggtgtgggacgttctggaagaggcaatttctgagcatcctgtgatgcttaaccgt
gcacctaccctgcaccgcctaggtatccaggccttcgagcctaagctcgttgagggtaaa
gctatccagctgcacccgcttgcctgtgaagccttcaacgccgacttcgacggtgaccag
atggctgtgcacttgccgctgtctgctgaggcgcaggctgaggctcgtatcctcatgctt
gcttctaacaacattctctccccggcatccggtaagccacttgccatgccacgtctggac
atggtgaccggtctttactacctcaccatggataagactgaggacgagatcggtggacag
ggtgcataccagcctgctaccgaaaccggaccagcaaccggcgtgtactcttcctacgct
gaggctcttatggctcgggatcgtggcgttcttggcctgcaggctaagatccaggtgcgt
attagccacctgcgtcccccgactgatgtcgaggcagaacagttcccagagggttgggag
cagggtcagacctggttggctgataccacccttggtcgcatcatgttcaacgagctcttg
ccgtggaactacccgtaccttgagggcgttatggtccgtaagggcggcggctccaacaag
attctcttgggcgacgtgattaacgacctcgctgcgacctatccgatgattactgtcgcg
cagacgatggacaagatgaaggatgccggtttctactgggcaacccgaagcggcgtgacc
atcaccatgtctgacgtgctcgttcttcctaacaaggaagagatccttgaccgctatgag
gccgaggctgcaaagatcgagcgcaagtactgggagcagggtgctctgaccgagcgcgag
cgctacgaccgtctggttgagctctggaaggaggctaccgacgaggttggtaacgccgtc
gagaagctctatccggacgacaacccgattcctatgatcgtgaagtccggtgctgccggt
aacatgcgtcagatctggaccctggccggcatgaagggcatggttgtgaactcaaagggt
gactacatcacccgaccgatcaagacttccttccgtgaaggcctgtcggttcttgagtac
ttcaataactctcacggttcgcgtaagggccttgccgataccgctctgcgtaccgctgac
tcgggttacctcacccgtcgtctggtggacgtcgcgcaggacgttatcgtccgcgaggac
gactgtggcaccaagcagggcattcgtgtcccattggctgtcgaggttaaggatgctcag
ggcaacgtcaccggttacaccggacacagcctcatcgagacctctgtcgctggccgtgtg
gcttccgtcgacgtcaaggactctgaaggcaacgtcttggtgccggctggtgaaaacctc
accgaccagctcatcgagaagctcatcgctgcgggtatcgcagaggtcaaggttcgctcc
gtgcttacctgccagaccccgaccggcgtgtgcgctaagtgctatggcaagtccatggct
accggcaagctcgttgacatcggagaagcagtgggtattgtcgctgctcagtccattggt
gagcctggtacccagctgacaatgcgtacgttccaccagggtggtgtcggtggcgacatt
actggtggtctgcctcgtgttcaggagctcttcgaggctcgtgttcctaagaaccgtgct
ccgattgcttctgttgcaggtaccgtccaccttgaggatgaaggcaacttctacaccctc
accatcaacccagatgatgggtctgatgttgtggtctacgagaagctttctaagcgtcag
ggtctggctaccgttcgggttcctatggagtccaaccctggtgccatgatcgagcgcacc
ttgtcagagggcgaccacgtgaacgtgggcgatcgtctgctgcgtggtcctgctgatccg
catgacgtacttgaggttcttggccgccgtggtgttgagcagcacctcgtcgacgaggtt
caggacgtttaccgtgcacagggtgtggctatccacgataagcacatcgagatcatcatc
cgtcagatgctgcgtcgtggaaccgtcatcgagtccggatcgactgagttcctcccaggt
actctcgttgatctttcggaggctaaggccgctaacgccgaggctattgccgctggtggt
cagcctgctgagctccgctcggagatcatgggtatcaccaaggcatcgctggctaccgag
tcgtggctgtccgccgcgtccttccaggagaccacacgcgtgcttaccgacgccgccatc
aacaagcggtccgataagctgatcggcctcaaggagaacgtgatcatcggtaagctgatc
ccggccggtaccggtatttcccgttaccgcaatatctccgttaagccgactgaggcagcc
cgcaatgcggcttactcaatcccgacttatggagactccatctatggcgatgacggctat
ggtgagttcaccggcgcctccgtgccactggatgaggcctacgacctctaa
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