Corynebacterium ulcerans 131002: CUL131002_0877
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Entry
CUL131002_0877 CDS
T03899
Symbol
deaD
Name
(GenBank) ATP-dependent RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
cuj
Corynebacterium ulcerans 131002
Pathway
cuj03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cuj00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CUL131002_0877 (deaD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cuj03019
]
CUL131002_0877 (deaD)
03009 Ribosome biogenesis [BR:
cuj03009
]
CUL131002_0877 (deaD)
Enzymes [BR:
cuj01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
CUL131002_0877 (deaD)
Messenger RNA biogenesis [BR:
cuj03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
CUL131002_0877 (deaD)
Ribosome biogenesis [BR:
cuj03009
]
Prokaryotic type
rRNA helicases
CUL131002_0877 (deaD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
UvrA_inter
CMS1
adh_short
Surface-like_ins_dom
Motif
Other DBs
NCBI-ProteinID:
AKA96418
LinkDB
All DBs
Position
907008..909050
Genome browser
AA seq
680 aa
AA seq
DB search
MSITDDATGGANEPDEKILSESQDNSQVDEGSITLDDVIADVDDSRVANTSEDTGSAQEA
DSDSNDGFEALGLPDAILKAVAKVGFETPSPIQAQTIPVLMEGHDVMGLAQTGTGKTAAF
ALPILSRINVKKRHPQALVLAPTRELALQVADSFQSFADHLGDIHVLPIYGGQAYGIQLS
GLRRGAQIIVGTPGRVIDHLEKGSLDISNLNYLVLDEADEMLSMGFQEDIERILEDTPAD
KQVALFSATMPNGIRRLSKQYMKDPREIQVKSETRTNTNITQRFLNVAHRNKLDALTRIL
EVTEFEAMIMFVRTKHETEEVAEKLRARGFSAAAINGDIAQAQRERTVDQLKDGRLDILV
ATDVAARGLDVERITHVFNYDIPNDTESYVHRIGRTGRAGRSGEAILFVTPRERRMLRSI
ERATNAELIEMDLPTVDEVNESRKAKFADSITESLEDSQVAIFRNLIKAYAEEHDTPLED
IAAALATQARAGSEFLMKEPPPEKRRERRDRFERDDRRGDRRDRGERRDRGDRGDRGDRG
SRFERSGDMAVYRLAVGKRQHVRPGAIVGALANEGGLSNKDFGRITIAVDHTLVELPKGL
PQSVFDNLRDTRISGQLINIEKDNGRPGRRDDYRGGDDRRGGDRRDDRRGGYRRDRRDDR
RDDRRGDRRDRGDRRDRYRG
NT seq
2043 nt
NT seq
+upstream
nt +downstream
nt
atgagcattaccgatgacgccaccggcggcgctaacgagccggatgagaagattttgtcg
gaatctcaggacaattcgcaggtagacgaaggcagcatcacacttgatgatgtaattgcc
gatgtagacgactccagggttgcgaacacttctgaggacaccggctccgcacaagaagcg
gacagtgacagtaacgatggctttgaggctttgggcctcccagacgcaatccttaaggca
gtcgccaaggttggctttgaaacgccgtcgcctattcaagcgcagaccatcccagtcctc
atggagggacacgatgtgatgggtctggcacagacgggtacgggtaagaccgctgcgttt
gccctcccgatcctttcccgtatcaatgtgaagaagcgccacccgcaggcgctggtcctt
gctcctactcgtgagcttgcacttcaggttgctgactctttccagtcttttgcagaccac
ctcggtgacattcatgtcctaccgatttacggtggacaggcatatggtattcagctgtca
ggcctccgacgtggtgcgcagatcatcgtgggtacgccgggtcgtgttatcgaccacctg
gaaaagggttcactcgatatttccaacctgaattacctcgtccttgacgaggcagatgag
atgctcagcatgggcttccaggaagatattgagcgcattcttgaggacactcctgctgat
aagcaggttgctctgttctccgcaacgatgcccaatggcattcgtcgtttgagcaagcag
tacatgaaggatcctcgcgagattcaggtgaagtccgagactcggaccaacaccaacatc
acgcagcgattcttaaatgttgctcaccgcaacaagctggatgctttgactcgtatcctt
gaggttacagagtttgaagcgatgatcatgttcgtgcgcacgaagcatgaaactgaagag
gtcgcagagaagctgcgcgctcgtggtttctctgccgctgccatcaatggtgacattgcg
caggcacagcgtgagcgtactgtggaccagcttaaggatggtcgcctagacattcttgtg
gctacagacgtagcagcgcgtggtctagacgttgagcgtattacccacgtattcaactac
gacattcctaacgacacggagtcttatgttcaccgcattggacgtaccggccgtgccggg
cgtagcggcgaggcgattctctttgttaccccacgcgagcgtcgtatgctgcgttccatc
gagcgtgctactaacgcagagctcatcgaaatggatcttcctacggtcgatgaggtcaac
gagtctcgtaaggcaaagtttgcagactcgatcacggaatcgctagaagattcccaggtt
gcgattttccggaatctgatcaaggcctacgcagaagagcatgacactccgcttgaggac
attgcggctgctttagctactcaggcccgtgcgggtagcgagttcttgatgaaggaaccg
ccaccggagaagcgtcgtgagcgtcgtgaccgctttgagcgtgatgatcgtcgtggcgac
cgtcgcgatcgcggtgagcgtcgtgaccgtggcgaccgaggtgaccgtggtgaccgtggt
tctcgctttgagcgttccggtgatatggctgtgtaccgccttgcggtaggcaagcgtcag
cacgttcgtccaggcgctatcgttggtgcactggcgaacgagggtggacttagcaacaag
gactttggtcgtatcaccattgctgtggatcacactttggtggagcttcctaaggggctt
ccacaatccgtctttgataatctgcgcgacacccgtatctcgggtcagctgattaacatc
gagaaggacaacggacgtccgggccgtcgcgatgactaccgtggtggcgacgaccgtcgc
ggtggagatcgcagggacgaccgtcgtggtggctaccgtcgtgatcgcagggacgaccgc
cgtgatgatcgtcgtggcgatcgtcgtgatcgcggtgaccgtcgtgaccgctaccgcggc
tag
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