Cupriavidus sp. KK10: KB879_07490
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Entry
KB879_07490 CDS
T08941
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
cuk
Cupriavidus sp. KK10
Pathway
cuk03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
cuk00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
KB879_07490 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cuk03400
]
KB879_07490 (mfd)
Enzymes [BR:
cuk01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
KB879_07490 (mfd)
DNA repair and recombination proteins [BR:
cuk03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
KB879_07490 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
MFD_D3
Helicase_C
CarD_TRCF_RID
ResIII
UB2H
AAA_30
SNF2-rel_dom
Cas3-like_C_2
AAA_22
ERCC3_RAD25_C
Motif
Other DBs
NCBI-ProteinID:
QUN29763
LinkDB
All DBs
Position
complement(1520385..1523834)
Genome browser
AA seq
1149 aa
AA seq
DB search
MPDAKPAFPFLNLPLVKPGLRHSVAGLRGSADALAVAAYARQHRERAPMLAVVCSHAVDA
QRLAEEIPWFAPELRVRLLPDWETLPYDSFSPHQDLVSERLATLHDIQTGQCDVMLVPAT
TALYRLAPPAFLAAYTFFFKQGERLDENALKAQFTLAGYEHVSAVMRPGEYSVRGGLIDL
YPMGSALPYRIDLFGDEIETIRAFDPDTQRSLYPVKEVRLLPGREFPLDEAARTAFRGRW
REVFEGDPTKSPIYKDIGNGVPSAGIEYYLPLFFEHSATVFDYLPADTQLAFAGNVDEAI
RRFWADTTQRYNFMRHDRERPLLPPADLFLSEEQFFVAAKPMARLVLQAEANADQAAFSA
MLPDVAVNRRADDPLVNLEALLLDKQTRVLMCADSAGRRETLLQLFAESGLRPHPVDDFA
AFLAGEAHFSIAVAPLQSGFALPQWQIAFVTEAELYAGTTRRTGRRKQEQASAVDSMVRD
LAELKIGDPVVHSEHGIGRYQGLVTLDMGQGDEEFLHLDYDKGSKLYVPVHQLHVISRYS
GADPDTAPLHHLGSGQWDKAKRKAAQQIRDTAAELLNLYARRAAREGFAFPLSPKDYETF
AESFGFEETPDQAAAIAAVIADMTSGKPMDRLVCGDVGFGKTEVALRAAFVAVLGGKQVA
MLAPTTLLAEQHFQTLSDRFAEWPVRIVELSRFKTKKEIDAAIKQINEGTVDIVIGTHKI
LSDQVRFERLGLVIIDEEHRFGVRQKEALKTLRAEVDVLTLTATPIPRTLGMALEGLRDF
SVIATAPQKRLAIKTFVRREEDGVIREAILRELKRGGQVYFLHNEVETIENKRARLAELV
PEARIAVAHGQMHERELERVMRDFVARRDNILLCTTIIETGIDVPTANTILIHRSDKFGL
AQLHQLRGRVGRSHHQAYAYLLVHDVEGLTKQAGRRLEAIQQMEELGSGFYLAMHDLEIR
GAGEVLGDKQSGEIHEIGFQLYTDMLNAAVKALKAGKEPDLMAPLAATTEINLGTPALLP
NDYCADVHERLSLYKRLANCETAERVDDIQEELIDRFGRLPAQAQALVETHRLRIAAAPL
GVRKIDAGEATISVQFVPNPPIDAMRIIDLVQKNRHIKLAGQDKLRIEAKMPDVAIRAQT
IKHTLRQLA
NT seq
3450 nt
NT seq
+upstream
nt +downstream
nt
atgcctgacgccaagcccgccttcccctttctcaacctgccgctggtcaagccggggctg
cgccacagcgtggccggcctgcgcggctcggccgatgcgctggctgtggccgcgtacgct
cggcagcaccgcgagcgcgcgccgatgctggccgtggtgtgctcccacgcggtcgatgcc
cagcgcctggccgaggaaatcccctggttcgcgcccgagctgcgcgtgcgcctgctgccc
gactgggaaaccctcccctacgacagcttctcgccgcaccaggatctggtgtccgagcgc
ctggccacgctgcacgatatccagaccgggcaatgcgacgtgatgctggtgccggccacc
accgcgctgtaccggctggcgccaccggctttcctggcggcctacaccttcttcttcaag
cagggcgagcgcctggacgagaacgcgctcaaggcccagttcacgctggccggctacgag
cacgtcagcgcggtgatgcgtcccggcgaatacagcgtgcgcggcggcctgatcgacctg
tacccgatgggctcggcgctgccgtaccggatcgacctgttcggcgacgagatcgaaacc
atccgcgccttcgaccccgatacccagcgcagcctgtacccggtcaaggaggtgcggttg
ctgcccgggcgcgagttccccctagacgaagccgcgcgcaccgccttccgcggccgctgg
cgcgaggtgttcgagggcgacccgaccaagtcgccgatctacaaggacatcggcaacggc
gtgccatcggccggcatcgagtactacctgccgctgttcttcgagcacagcgcaaccgtg
ttcgactacctgcccgccgatacccagttggctttcgccggcaatgtcgacgaggccatc
cgccgcttctgggccgataccacgcagcgctacaacttcatgcgccacgaccgcgagcgc
ccgctgctgccgcccgcggacctgttcctgtccgaggagcagttcttcgttgccgccaag
ccgatggcgcgcctggtgctccaggccgaagccaatgcggaccaggccgcgttctcggcc
atgctgcccgacgtcgcggtgaaccgccgcgccgatgatccgctggtcaacctggaagcg
ctgctgctcgacaagcagacccgcgtgctgatgtgcgccgactcggccgggcggcgcgag
accctgctgcagctctttgccgaaagcggcctgcgcccgcatccggtggacgactttgcc
gcgttcctggccggcgaagcgcatttctcgatcgcggtggcgccgctgcagagcggcttt
gcgctgccgcagtggcagatcgcctttgtcaccgaggccgagctctacgccggcaccacg
cgccgcaccggccgccgcaagcaggagcaggcctccgccgttgactcgatggtgcgcgac
ctggccgagctgaagatcggcgacccggtggtgcacagcgagcacggcatcggccgctac
cagggcctggtcacgctggacatgggccagggcgacgaggaattcctgcacctggactac
gacaagggcagcaagctgtacgtgccggtgcaccagttgcacgtgatctcgcgctattcc
ggcgccgatcccgataccgcgccgctgcaccacctgggctcgggccagtgggacaaggcc
aagcgcaaggcggcccagcagatccgcgacaccgctgccgagctgctcaacctgtacgcg
cgccgcgccgcgcgcgagggctttgccttcccgctctcgcccaaggactacgagaccttt
gccgagagcttcggcttcgaggaaacgccggaccaggccgccgccattgccgcggtgatc
gccgacatgacctcgggcaagccgatggaccggctggtctgcggcgacgtgggcttcggc
aagaccgaggtggcgctgcgcgcggcctttgtcgcggtgctgggcggcaagcaggtggcg
atgctggcgccgaccacgctgctggccgagcagcacttccagacgctgtccgaccgcttt
gccgaatggccggtgcgcatcgtcgagctgtcgcgcttcaagaccaagaaagagatcgac
gcggccatcaagcagatcaacgaaggcaccgtcgacatcgtcatcggcacccacaagatc
ctgtccgaccaggtcaggttcgagcgcctgggcctggtcatcatcgacgaggaacaccgc
ttcggcgtgcgccagaaggaggcgttgaagaccctgcgcgccgaggtcgacgtgctgacc
ctgaccgccacgccgatcccgcgcacgctgggcatggcgctggaaggcctgcgcgacttc
tcggtgatcgcgaccgcgccgcagaagcggctggcgatcaagaccttcgtgcggcgcgag
gaagacggcgtgatccgcgaggccatcctgcgcgagctcaagcgcggcggccaagtatac
ttcctgcacaacgaggtcgagaccatcgagaacaagcgcgcgcggctggccgagctggtg
ccagaggcgcgcattgccgtcgcgcacggccagatgcacgagcgcgagctggaacgcgtg
atgcgcgacttcgtcgcgcgccgcgacaacatcctgctgtgcaccaccatcatcgagacc
ggcatcgacgtgccgaccgccaacaccatcctgatccaccgctcagacaagttcggcctg
gcgcagctgcaccagctgcgcggccgggtcgggcgctcgcaccaccaggcctatgcctac
ctgctggtgcatgacgtcgagggcctgaccaagcaggcggggcgccggctggaggccatc
cagcagatggaagaactgggctccggcttctacctggccatgcacgacctggaaatccgt
ggcgcgggcgaggtgctgggcgacaagcagtcgggcgagatccacgagatcggcttccag
ctctacaccgacatgctcaacgccgcggtcaaggccctcaaggcgggcaaggagcccgac
ctgatggcgcccttggccgccaccaccgagatcaacctgggcacgccggcgctgttgccc
aacgactactgcgccgacgtgcacgagcgcctgtcgctgtacaagcggctggccaactgc
gagaccgccgagcgcgtggacgacatccaggaagagctgatcgaccgcttcggccggctg
ccggcgcaggcgcaggcactggtcgagacccaccggctgcgcatcgccgcggcgccgctg
ggcgtgcgcaagatcgacgcgggcgaggccaccatcagcgtgcagttcgtgcccaacccg
ccgatcgacgcgatgcgcatcatcgacctggtgcagaagaaccgccatatcaagctggcc
gggcaggacaagctgcgcatcgaggccaagatgccggacgtggcgatccgcgcgcagacc
atcaagcatacgttgcggcaactggcgtag
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