Cupriavidus sp. KK10: KB879_23615
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Entry
KB879_23615 CDS
T08941
Symbol
hrpA
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
cuk
Cupriavidus sp. KK10
Brite
KEGG Orthology (KO) [BR:
cuk00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cuk03019
]
KB879_23615 (hrpA)
Enzymes [BR:
cuk01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
KB879_23615 (hrpA)
Messenger RNA biogenesis [BR:
cuk03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
KB879_23615 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
HA2_C
Helicase_C
DEAD
WHD_HA2
AAA_19
AAA_22
T2SSE
nSTAND3
NACHT
nSTAND_NTPase5
SseK_NleB
Motif
Other DBs
NCBI-ProteinID:
QUN27059
LinkDB
All DBs
Position
complement(5068953..5072990)
Genome browser
AA seq
1345 aa
AA seq
DB search
MSEQRPVKPKPPAAPSQRAGAGQSASPTQSRPAPGPVRKSDVRPQPAAARPAGEAGQRPP
RGPREPRPPRAPRPVNPLPPITFPEALPVSGRRDEIAAALLANQVVIVSGETGSGKTTQL
PKICLSIGRGPGREGGGLIGHTQPRRIAATSTAKRIAQEIGTPLGEHVGYQVRFNDTMSS
GASVKLMTDGILLAETQNDPLLRAYDTLIIDEAHERSLNIDFLIGYLRQILPKRPDLKVI
ITSATIDAQRFAQHFAAGDKPAPVIEVSGRLYPVEVRYRPITEDVPAGAPRSPQARERDL
YDGIVEAVDELCRVGPGDVLVFLPGEREIREAAEALRKHHPPHTEILPLFARLSVQEQER
VFKPSNARRIVLATNVAETSLTVPGIRYVVDTGLARVKRYSYRNKVEQLQVESISQAAAN
QRAGRCGRVANGVCIRLYEESDFTGRPRFTDPEILRSSLAAVILRMKALRLTEIESFPFI
EPPLGRAVADGYQLLQELGAVDDANQLTGTGRQLAKLPLDPRVARMILAAREHQCLREVL
VIASALSVQDPRDRPQEAQEAADQAHRKFMDEKSEFLGWVRLWKWFEDAVAHKKSNRQLQ
DQCRAHFLSHLRLREWRDVHSQLLTTVTEQGWRLNDSEPTYEQVHKALLTGLLGNVGCRI
EDGDGKGREYLGARGIKFHLWPGSLIARKVGRWIVAAELVETSRLFARTLARIEPEWLEQ
VGRHLLKVSWSDPHWEKKAGQVLALERATLYGLVVYQHRRVHYGPMNPQEAREIFIRRAL
VEGEFDTRLPFYAHNQRLVREIENLEHKSRRQDVLVDDELIYAFYDRAIPADICQQATFE
QWYQAESVRDRKLLYLNRDELMRHEAAGITTDLFPKTMNVAGVGMGLTYHFEPGSHRDGV
TLTVPLYALNQVRQERADWLVPGMIREKVHLLLKSLPQKLRRHCVPLPEYAAGFVARQPL
GEGELLDVLIADIREQTGTMVKRADFKLETLPAHHTMNFKVVDEHGRQLEMGRNLAQLRA
ELGGQAQQSFQRVAAQAAAQAATLAPEQAAPLAAAEPGKYEGLTGWTFGELPELLEIRKG
SQTLFGYPALVDRGTHCDVEVFDDPQEAARVHHLGLRRLFALQLREQVKFIEKNIPGLQQ
MAMQYMTLGTQEMLREQIVMLALERACMQAPLPRNEAEFNARKDEGRTRLSLLAQEIARL
VGTILAEYAGLPRKLLQAKPFAGPHADMEAQLGRLMGKRFVDETPYTQLVHFPRYLKGIA
MRVDKLKGDPARDTQRTQEMAPLVQQWQRAEKQLRTQGRGGEDARLEEFRWMLEELRIAL
FAQELRTPVPMSVKRLQKVWESMQR
NT seq
4038 nt
NT seq
+upstream
nt +downstream
nt
atgtcagaacaacgccccgtcaagcctaaaccacccgccgcgccgagccagcgcgccggt
gccggtcagtccgcctccccaacccagtcccggccggccccaggcccggtcaggaagtcg
gacgtccgtccgcagccagccgctgcccggccggccggtgaggccgggcagcgcccgcca
cgcggtccccgcgagccgcggccgccgcgtgcgccaaggccggtcaacccgctgccgccc
atcaccttcccggaggccctgccggtctccggccgtcgcgacgagatcgccgcggcgctg
ctggccaaccaggtggtgatcgtctcgggcgagaccggctcgggcaagaccacccagctg
cccaagatctgcctgtcgatcgggcgcggcccggggcgcgagggtggggggctgatcggc
cacacccagccgcggcgcatcgccgcgacctcgaccgccaagcgcatcgcgcaggaaatc
ggcacgccgctgggcgagcacgtgggctaccaggtgcgtttcaatgacaccatgtcgtcg
ggggcgtcggtcaagctgatgaccgacggcatcctgctggccgagacccagaacgatccg
ctgctgcgcgcctatgacacgctgatcatcgatgaggcgcacgagcgcagcctgaacatc
gacttcctgatcggctacctgcgccagatcctgccaaagcgcccggacctgaaggtgatc
atcacctcggccaccatcgatgcccagcgctttgcccagcatttcgccgcgggcgacaag
ccggcgccggtgatcgaggtcagcggccgcttgtacccggtggaagtgcgctaccgtccg
atcaccgaggacgtgcccgccggcgcgccgcgcagcccgcaggcacgcgagcgcgacctg
tacgatggcattgtcgaggccgtcgacgagctgtgccgcgtcggccccggcgatgtgctg
gtcttcctgcccggcgagcgcgagatccgcgaagccgccgaggcgctgcgcaagcaccac
ccgccgcataccgagatcctgccgctgtttgcgcggctgtcggtgcaggagcaggagcgg
gtgttcaagccgtccaacgcacggcgcatcgtgctggcgaccaacgtcgccgaaacctcg
ctgacggtgccgggcatccgctacgtggtcgataccgggctggcgcgggtcaagcgctac
tcgtaccgcaacaaggtcgagcaactgcaggtcgagtcgatctcgcaggccgctgccaac
cagcgcgccggccgttgcggtcgggttgccaacggcgtgtgcatccggctgtatgaggag
tccgatttcaccggccgtccgcgctttaccgaccccgagatcctgcgctcgtcgctggcc
gcggtgatcctgcgcatgaaggcgctgcggctgaccgagatcgagtcgttcccgtttatc
gagccgccgctgggccgcgccgtcgcggacggctaccagctgctgcaggaactgggcgcg
gtcgacgacgccaaccagcttaccggcaccgggcgccagctggccaagctgccgctggac
ccgcgcgtggcgcgcatgatcctggccgcgcgcgagcaccagtgcctgcgcgaggtgctg
gtcatcgccagcgcgctgtcggtgcaggacccgcgcgaccgcccgcaggaggcgcaggaa
gccgccgatcaggcgcatcgcaagttcatggacgagaagtccgagttcctgggctgggtc
aggctgtggaagtggttcgaggatgcggtcgcgcacaagaagtccaaccgccagctgcag
gaccagtgccgcgcccacttcctgtcgcacctgcggctgcgcgagtggcgcgacgtgcat
tcgcagctgctgaccacggtgaccgagcagggctggcgcttgaatgacagcgagcccacc
tatgagcaggtgcacaaggcgctgctgactggcctgctgggcaatgtcggctgccgcatc
gaggatggcgacggcaagggccgcgaatacctgggcgcgcgcggcatcaagttccacctg
tggccgggctcgctgatcgcgcgcaaggtcgggcgctggattgtcgcggccgagctggtc
gagaccagccggctgttcgcgcgcacgctggcgcgcatcgagccggaatggctggaacag
gtgggccgccacctgctcaaggtcagctggagcgatccgcactgggaaaagaaggcgggc
caggtactggcgctggaacgcgccacgctgtacgggctggtggtctaccagcaccgccgc
gtgcattacggcccgatgaacccgcaggaagcgcgcgagatctttatccgccgcgcgctt
gtcgagggcgagttcgatacgcgcctgccgttctatgcgcacaaccagcgcctggtgcgc
gagatcgagaacctggagcacaagtcgcgccgccaggacgtgctggtcgacgacgaactg
atctacgccttctacgatcgcgcgattcccgccgacatctgccagcaggccaccttcgag
cagtggtaccaggccgagagcgtcagggaccgcaagctgctgtacctgaaccgcgacgag
ctgatgcggcacgaggcggccggcatcaccaccgacctgttccccaagaccatgaacgtg
gccggggtgggcatggggctgacctaccacttcgagccaggcagccaccgcgacggcgtg
accctgaccgtgccgctgtacgcactcaaccaggtgcgccaggagcgcgccgactggctg
gtgccgggcatgatcagggagaaggtgcacctgctgctcaagtcgctgccgcagaagctg
cgccgccactgtgtaccgctgccggagtatgccgcgggctttgtcgcgcgccagccgctt
ggcgagggcgagctgctggatgtgctgattgccgatatccgcgagcagaccggcaccatg
gtcaagcgggccgacttcaagctggaaacgctgcccgcgcaccatacgatgaacttcaag
gtggtcgacgagcacggccgccagcttgagatgggccgcaacctggcccagttgcgcgcc
gagctgggcgggcaggcgcagcagtcgttccagcgggtggccgcgcaagccgcggcacag
gcggcaaccctggccccggagcaggcggcgccgctggccgcggccgagcccggcaagtac
gagggcctgaccgggtggaccttcggtgagctgcccgagctgctggagatccgcaagggc
agccagaccctgttcggctaccccgcgctggtcgaccgcggcacgcactgcgacgtggaa
gtcttcgacgacccgcaggaagccgcccgcgtccaccacctggggctgcgccggctgttt
gcgctgcagctgcgcgagcaggtcaagttcatcgagaagaacatcccgggcctgcagcag
atggcgatgcagtacatgacgctgggcacgcaggagatgctgcgcgagcagatcgtgatg
ctggcgctggagcgtgcctgcatgcaggcgccgctgccgcgcaacgaggccgagttcaat
gcgcgcaaggacgagggccgcacccggctgtcgctgctggcgcaggagatcgcgcggctg
gtggggaccatcctggccgagtacgccgggctgccgcgcaagctgctgcaggccaagccg
ttcgccgggccccatgcggacatggaagcgcagctcgggcggctgatgggcaagcgcttt
gtcgacgagaccccgtacacgcagctggtccatttcccgcgctacctgaagggcatcgcc
atgcgggtggacaagctcaagggcgacccggcgcgcgacacgcagcgcacgcaggagatg
gcgccgctggtgcagcagtggcagcgggccgaaaagcagctgcgcacccagggccgcggc
ggcgaggacgcgcggctggaggaattccgctggatgctggaggagctgcgcatcgcgctg
ttcgcccaggagctgcgtacaccggtgccgatgtcggtcaagcggctgcagaaagtgtgg
gaatcgatgcagcgctga
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