Cupriavidus sp. KK10: KB879_23650
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Entry
KB879_23650 CDS
T08941
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
cuk
Cupriavidus sp. KK10
Pathway
cuk03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cuk00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
KB879_23650 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cuk03019
]
KB879_23650 (rnr)
03016 Transfer RNA biogenesis [BR:
cuk03016
]
KB879_23650 (rnr)
Enzymes [BR:
cuk01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
KB879_23650 (rnr)
Messenger RNA biogenesis [BR:
cuk03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
KB879_23650 (rnr)
Transfer RNA biogenesis [BR:
cuk03016
]
Prokaryotic type
tRNA degradation factors
KB879_23650 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
RNase_II_C_S1
CSD
OB_Dis3
WHD_RNase_R
Motif
Other DBs
NCBI-ProteinID:
QUN27065
LinkDB
All DBs
Position
complement(5078390..5080993)
Genome browser
AA seq
867 aa
AA seq
DB search
MNQNNYPIPSREEILGVLRTSGSPQSAGDIAKALSVTRKEHDGFQKRLAAMERDGQIELN
RKGRYELAHQPNFVTGRVQGHRDGFGFLIRDDGEDDIFLPERELQKAMHNDRAQVRVVGY
DRRGRPEGQIVEIIERANRFVIGRLLSEGGVLVVAPEDKRISQDILIPPKAQGKARVGQV
VSVELIEFPDRYVQPVGRVVEVLGDIDDPGMEIEIAVRKYGVPHAFAPAAAQEAAALPDE
VRQADLDHRIDLRDIPLVTIDGEDARDFDDAVYCEPVKIGRAKGWRLIVAIADVSHYVRP
GTPLDADALDRATSVYFPRRVIPMLPEKLSNGLCSLNPLVDRLCMVCDAVITAKGELKGY
QFYPAVMHSAARLTYNEVWSVLSNTKGPEAHKRSELVPHLQNLYELFQVLLKARRARGAI
DFDTTETYIVCNAQGKIEQILPRTRNDAHRLIEECMLTANVCAADFLERFKHPALYRIHA
GPSEEKLKNLRDFLRTAGLSLGGGDKPQASDYAEVMDKIKSRPDAPMLQTMLLRSMQQAV
YSPDNIGHFGLAYEAYAHFTSPIRRYPDLLVHRAIKAVLAHTKYQPAFAHGTELNTAISP
KARRLQAKDAEQKAELTAARAKRNEAIWDELGLHCSANERRADEASRDVEAWLKCYFMRD
KLGSDYAGTISAVTSFGIFVQLDELYVEGLVHVTELGSDYFQYDEARNELRGERTGIRYR
LTDRVRVQVSRVDLDARKIDFRLVQEPSAKTLRARAGGTETQPRVPAAHAVPARKKGRQL
AALLGGSSKPEESFDETLDRVIEEQPVFEAVITPLRPHVKTGGKPAKHAAKPKPSHLEKP
RKPASKSHQAKPAGKTPAKSPRTPRKR
NT seq
2604 nt
NT seq
+upstream
nt +downstream
nt
ttgaatcagaacaactatccgatccccagccgggaagaaatcctgggcgtgttgagaacg
tcgggatccccccagtcggccggcgatattgccaaggccctctccgtcacgcgcaaagag
catgacggttttcagaagcgcctggcggccatggagcgcgacggccagatcgagctgaac
cgcaagggccgctatgaactggcccatcagccgaacttcgtcaccggccgggtgcagggc
caccgcgacggctttggcttcctgatccgcgacgacggcgaagacgacatcttcctgccc
gagcgcgaactgcagaaggccatgcacaacgaccgcgcgcaggtgcgcgtggtcggctac
gaccggcgcgggcgccccgaagggcagatcgtcgagatcatcgagcgcgccaaccgtttt
gtcatcggccgtctgctcagtgaaggcggcgtgctggtggtggcgcctgaagacaagcgc
atcagccaggacatcctgatcccgcccaaggcgcagggcaaggcacgggtggggcaggtg
gtcagcgtcgagctgatcgaattccccgaccgctacgtgcagccggtgggccgcgtggtg
gaggtgctaggggacatcgacgatcccggcatggagatcgagatcgccgtgcgcaagtac
ggcgtgccgcatgcgttcgcgccggccgccgcccaggaagccgccgcgctgcccgacgag
gtgcgccaggccgacctggaccaccgcatcgacctgcgcgacatccccctggtgaccatc
gacggcgaagacgcacgcgacttcgacgatgcggtctattgcgagccggtcaagatcggt
cgcgccaagggctggcgcctgatcgtggcgatcgccgatgtgtcgcactatgtgcgcccc
ggcacgccgctggacgcggatgcgctggaccgggccacctcggtctacttcccgcgccgc
gtgatcccgatgctgccggagaagctgtccaatgggctgtgctcgctcaatccgctcgtg
gaccggctgtgcatggtgtgcgatgccgtgatcaccgccaagggcgaactcaagggctat
cagttctacccggccgtgatgcattcggccgcgcgcctgacctacaacgaggtctggtcg
gtgctgtccaacaccaagggccccgaggcgcacaagcgcagcgagctggtgccgcaccta
cagaacctgtatgagctgttccaggtcctgctcaaggcacggcgcgcgcgcggcgcgatc
gacttcgacaccaccgagacttatatcgtctgcaacgcgcagggcaagatcgagcagatc
ctgccgcgcacgcgcaacgacgcgcaccggctgatcgaagagtgcatgctgaccgccaac
gtatgcgcggccgacttcctcgaacgcttcaagcacccggcgctgtaccgcatccacgcg
ggccccagcgaagagaagctgaagaacctgcgcgacttcctgcgcaccgccggcctgtcg
ctgggcggcggcgacaagccgcaggcatcggactacgccgaggtgatggacaagatcaag
tcccgtcccgacgcgccgatgctgcagaccatgctgctgcgctcgatgcagcaggcggtc
tacagcccggacaatatcggccacttcggcctggcgtacgaggcctacgcgcacttcacc
agcccgatccgccgctaccccgacctgctggtgcaccgcgcgatcaaggcggtgctggcg
cataccaagtaccagccggcgtttgcgcacgggaccgagctgaataccgcgatctcgccc
aaggcgcgccggctgcaggccaaggacgccgagcagaaggcagaactgaccgcggcgcgc
gccaagcgcaacgaggccatctgggacgagctcggcctgcactgctcggccaatgagcgc
cgcgcggacgaggcttcgcgcgatgtcgaggcctggctcaagtgctacttcatgcgcgac
aagctgggcagcgactacgcgggcaccatcagcgccgtgacctcgttcggcatcttcgtg
cagctcgacgagctgtatgtggaaggcctggtccacgtgaccgagctgggcagcgactac
ttccagtacgacgaggcccgcaacgagctgcgcggcgagcgcaccggcatccgctaccgc
ctgaccgaccgcgtgcgcgtgcaggtctcgcgcgtggacctggatgcgcgcaagatcgac
ttccgcctggtgcaggagccgtcggcgaaaaccctgcgcgcccgcgcggggggcaccgag
acccagccgcgcgtgcctgccgcccatgcggtgccggcacgcaagaagggccgccagctg
gcggcgctgctgggcggctcgtccaagccggaagagtcattcgacgagacgctggaccgt
gtgatcgaggagcagccggtgttcgaggcggtgatcacgccgctcaggccgcatgtgaag
accggcggcaagccggccaagcacgcggccaagcccaagccctcgcacctggagaagccg
cgcaagccggcctccaagtcgcaccaggccaagccggcgggcaagacgccggccaagagc
ccgcgcaccccgcgcaagcgctga
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