Cupriavidus sp. KK10: KB879_23875
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Entry
KB879_23875 CDS
T08941
Name
(GenBank) PD-(D/E)XK nuclease family protein
KO
K16899
ATP-dependent helicase/nuclease subunit B [EC:
5.6.2.4
3.1.-.-]
Organism
cuk
Cupriavidus sp. KK10
Brite
KEGG Orthology (KO) [BR:
cuk00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cuk03400
]
KB879_23875
Enzymes [BR:
cuk01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
KB879_23875
DNA repair and recombination proteins [BR:
cuk03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
AddAB pathway proteins
KB879_23875
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PDDEXK_1
Motif
Other DBs
NCBI-ProteinID:
QUN27108
LinkDB
All DBs
Position
complement(5130526..5133393)
Genome browser
AA seq
955 aa
AA seq
DB search
MTSLRFRPGPDFLDQAATAAWYFLDRCGAPEAGAHVVVPTAAQIPGVRQALDAAARAAGR
PRLLPRVLTLGHWLLDLPPEGAPVRSPAARLLAVQQAVRGQDWLRRAFGAQNETAAWGLS
QTLLSICDELNARWLEDAAIRDDDEIDGDDRAGLLQGALERTYSHLSERFLGEEARIVLA
FWQALSGPDDPLPARRRALRELSQQLRGPVIWIAPTPPTPLEAAFLRDAAELVPVLQVGY
DWTGQGESDADWYQTLLALWPEARIADDAEGVAPPPAMPALPPQRPAIRVVGSARFEDEA
AAAAAQLVQWLNEGRRQVALVAHDRVVARRARALLARAGAPVRDETGWKLSTTRAAAALM
RWFDLLVRDGDTAALLDLLKSPFCLPDAAGRGVAIALLERQVRREGITGGWARLRQLFGH
APTDAQQAAAEDEDAAEAPRRAAHALIAVLADEAARWPRGLAQHPLATWLERLDGMLDGL
GMRAALAADDAGSQLLDALARLQELPLDETGGHATLSQGEFRAMLSALLESVAYKEPSAS
GPARITILPLNGARMRRFEGVVIVGCDDAQLPSSAAELMFFSNQMRRELDLEDREARFAQ
QARDLAEVLLNNDDVVLTWQRYGSRGEPHHVSGWIERLAACCARAGVSIEAVAAPQAHET
FADPQGMPAPAAEPALVPVRWSAQAYNMLRRCPYQFFAGRMLGLAGLETVSDELEKREIG
EHLHHVLLRYHKDLQARRERGETLAEDQRLARLAEISDDVFGALMAEDGNAIAYYRRWRE
VMPSYVAWQSAREAEGWFWRGGELDAGMDLPMPDGQPLRLTGRIDRLDQGPGGAHAVLDY
KTQSATRLKRKLAEVEEDCQLPFYGLLRADAAAGSWVSLEGAREGAPAAQREVGLPDFEA
AVIWLERQMRDDVMRLRQGARLPAFGDASACLYCTARGLCRKGFWESTAVPALTS
NT seq
2868 nt
NT seq
+upstream
nt +downstream
nt
atgacgtcgctacgttttcgccctggccctgatttcctcgaccaggcggccactgctgcc
tggtatttcctcgaccgctgcggcgcgccggaggcgggcgcgcacgtggtggtgcccacc
gccgcgcagatcccaggcgtgcgccaggcactggacgccgccgcccgcgcggcgggccgc
ccgcggctgctaccgcgcgtgctgacgctgggccactggctgctcgacctgccgccagag
ggcgccccggtgcgcagccctgccgcacgcctgctggccgtgcagcaggcggtgcgcggg
caggactggctgcgccgcgccttcggcgcccagaacgagaccgccgcatggggcctgtcg
cagacgctgctgtcgatctgcgacgagctcaacgcgcgctggctcgaagacgccgccatc
cgcgacgatgacgagatcgacggcgacgatcgcgccggtctgctgcagggcgcgctggaa
cggacctattcgcatctgtctgagcgcttcctcggcgaagaggcgcgcatcgtgctggca
ttctggcaggcgctgtccggcccggacgatccgctgccggcgcggcgccgcgccttgcgc
gagctgtcgcagcagctgcgcggcccggtgatatggattgccccgaccccgcccacgccg
cttgaggccgcgttcctgcgcgatgccgccgagctggtgccggtgctgcaggtcggctat
gactggaccgggcagggcgagagcgatgccgactggtaccagacgctgctggcgctgtgg
ccggaagcgaggatcgccgacgatgccgaaggcgtcgcccctccgccggccatgcctgcg
ctgccgccgcagcgtccggcgatccgcgtggtcggcagcgcgcgcttcgaggatgaagcc
gccgcggcagccgcgcaactggtgcagtggctcaatgaaggccgccgccaggtggcgctg
gtcgcgcacgaccgcgtggtggcgcggcgcgcccgcgccttgctggcgcgcgccggcgca
ccggtgcgcgacgagaccggctggaagctttccaccacgcgcgccgccgccgcgctgatg
cgctggttcgacctgctggtgcgcgatggcgacaccgccgcgctgctggacctgctcaag
agcccattttgcctgccggacgctgccgggcgcggcgtggccatcgcgctgcttgagcgc
caagtgcggcgcgagggcatcaccggcggctgggcgcgcctgcgtcagctgttcggtcac
gcaccgaccgacgcgcagcaagctgccgcggaagatgaggatgccgctgaagcgccgcgc
cgcgccgcgcacgcgctcatcgccgtgctcgccgacgaagccgcgcgctggccgcgcggc
ctggcgcagcatccgctggcaacctggctggaacggctcgacggcatgctcgacggcctc
ggcatgcgcgcggcgctggccgcggacgatgccggcagccagctgctcgatgcactggcg
cggctgcaggagttgccgctggacgagaccggcggccatgccacgctgtcgcagggtgaa
ttccgcgcgatgctgtcggcgctgctggaatcggtcgcctacaaggagccctcggccagc
ggcccggcgcgcatcaccatcctgccgctgaacggcgcgcgcatgcgccgcttcgagggc
gtggtgatcgtcggctgcgatgacgcgcaactgccctccagcgccgccgagctgatgttc
ttctccaaccagatgcggcgcgagctggacctggaagaccgcgaggcccgctttgcgcaa
caggcgcgcgacctggccgaggtgctgctgaacaacgacgacgtggtgctgacctggcaa
cgctacggcagccgcggcgagccgcatcatgtgtcgggctggatcgagcggctggcggcg
tgctgcgcgcgcgcgggcgtcagcatcgaagccgtcgccgcaccgcaggcgcacgagacc
tttgccgatccgcagggcatgccggcgccggcggcagagcccgcgctggtgccggtgcgc
tggagcgcgcaggcctacaacatgctgcgccgctgcccctaccagttcttcgccggccgc
atgctgggcctggccgggctggagacagtcagcgacgagctggaaaaacgcgagatcggc
gaacacctgcaccacgtgctgctgcgctaccacaaggacctgcaggcgcgccgcgagcgc
ggcgagacgctggccgaagaccagcgcctggcccgcctggccgagatttccgatgacgtg
ttcggcgcgctgatggccgaggacggcaatgccattgcctactaccggcgctggcgcgag
gtgatgccgtcgtacgtcgcctggcaatccgcgcgcgaggccgagggctggttctggcgc
ggcggcgagctcgacgccggcatggacctgccgatgcccgacggccagccgctgcgcctg
acggggcgcatcgaccggcttgaccagggcccgggcggggcgcatgccgtgctcgactac
aagacgcagagcgccacccgcctcaagcgcaagctggccgaggtcgaggaagactgccag
ctgccgttctacggcctgctgcgcgccgatgcggcagcaggcagttgggtatcgctcgaa
ggcgcgcgcgagggcgcaccggcggcgcagcgcgaagtcggcctgcccgatttcgaagcc
gccgtcatctggctggaacggcagatgcgcgacgacgtcatgcgcctgcgccagggcgcc
aggctgccggccttcggcgatgcctccgcctgcctgtattgcactgcccgcggcctgtgc
cgcaagggcttctgggaatccaccgccgtgccggcgctgacatcatga
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