Cupriavidus sp. KK10: KB879_24810
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Entry
KB879_24810 CDS
T08941
Name
(GenBank) Rne/Rng family ribonuclease
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
cuk
Cupriavidus sp. KK10
Pathway
cuk03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cuk00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
KB879_24810
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cuk03019
]
KB879_24810
03009 Ribosome biogenesis [BR:
cuk03009
]
KB879_24810
Enzymes [BR:
cuk01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
KB879_24810
Messenger RNA biogenesis [BR:
cuk03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
KB879_24810
Ribosome biogenesis [BR:
cuk03009
]
Prokaryotic type
rRNA processing factors
KB879_24810
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
QUN27271
LinkDB
All DBs
Position
5323276..5326389
Genome browser
AA seq
1037 aa
AA seq
DB search
MKRMLFNATQQEELRVAIVDGQKLIDIDIETAGREQRKGNIYKGVITRIEPSLEACFVNY
GEERHGFLPFKEVARAFFKEGIDVRNARIQDALHEGQELIVQVEKEERGNKGAALTTFIS
LAGRYLVLMPNNPRGGGVSRRIEGEDRQELRETMAQLTVPEGMSIIARTAGIGRSAEELQ
WDLNYLLQLWKAIDGAAGDNKAPLLIYLESSLVIRAIRDYFQPDIGEILIDTDEIYEQAR
AFMSVVMPDNMNRVKKYRDDVPLFSRFQIEHQIESAYSRMVMLPSGGAIVIDHTEALVSV
DVNSARATKGADIEETALRTNLEAADEIARQLRLRDLGGLIVIDFIDMESGKAQKDVETR
LKDALRHDRARVQMGKISRFGLMELSRQRLRPSLSEGSHITCPRCNGTGHIRDTESSALQ
VLRIIQEEAMKENTAAIHCQVPVEVAAFLLNEKRQEINLIELRFKVNVLLIPNKHLETPH
YKLERLRHDDPRLEESTASYRMAEAAAKELEADTSYSSRRKEEAKPRQEAAVKGITPEQP
APVSVPRPERAPKPEAPVAPPVPATQPVVSGGFIAWLKGLFGARPATPPVVEPAKPAAAT
ETRSAEGRRERGQRGEGRGQRGERGDRAERGERTERGERGERQGRGQRGDRAERAERGER
QGAERGEQREGRGERQGRQPRQQGEGQATPALARQGEAVQAERAQGERVEGRQEGRRDRN
QERRERQRERQRERSELREAEAGEAPQPEAIAAAQALGVLPQAVTEETQAVRAELPEGAE
SAAETAEGEERRRRNRRGRNRYRRERDESAQGAQGEGEGEGDEEAAAAEGVAPVRAEAAV
PAEPAPQAAVAVAAAAEAVEAIRIAVPEDVAPAPVAEAAPLTAPAAEPVPQQAAPVAVAV
TEAVAAEAIVETTASVAAEAAPVVPAPAAAPVAAPVAEAAPAEVSAPAAPVVAAAPAAPA
ASATPAALENLEPMLATAGLQWVHTDSDKLRSAQEAAARMAPAPRVQRERKALPPLPHGP
MILVETGGREVEMASQQ
NT seq
3114 nt
NT seq
+upstream
nt +downstream
nt
atgaaacgcatgctgttcaacgcgacgcaacaggaagaattgcgcgtcgccattgtcgac
ggtcagaaactgatcgatatcgacatcgagactgccgggcgcgaacagcgcaagggcaac
atctacaagggtgtcatcacccgcatcgaaccctcgctggaagcctgcttcgtcaactac
ggcgaagagcgccacggcttcctgccgttcaaggaagtagcccgcgccttcttcaaggaa
ggcatcgacgtgcgcaacgcgcgcatccaggatgccctgcatgaaggccaggaactgatc
gtccaggtcgagaaggaagagcgcggcaacaagggcgcggccctgaccacctttatctcg
ctggccggccgctacctggtgctgatgcccaacaacccgcgcggcggcggagtgtcgcgc
cgcatcgagggcgaggaccggcaggaactgcgtgaaaccatggcgcagctgaccgtgccg
gaaggcatgagcatcatcgcccggaccgccggcatcggccgctcggccgaggaactgcag
tgggacctgaactacctgctgcaactgtggaaggccatcgacggcgccgccggcgacaac
aaggctccgctgctgatctacctggaatcgagcctggtcatccgcgccatccgcgattac
ttccagccggatatcggcgagatcctgatcgataccgacgagatctacgaacaggcccgc
gccttcatgagcgtggtgatgcctgacaacatgaaccgcgtgaagaagtaccgggacgac
gtgccgctcttctcgcgcttccagatcgaacaccagatcgagtcggcctactcgcgcatg
gtgatgctgccctctggcggcgccatcgtgatcgaccacaccgaggcgctggtctccgtg
gacgtgaactcggcccgcgccaccaagggcgccgacatcgaggaaaccgcgctgcgcacc
aacctcgaggccgccgacgagatcgcccgccagctgcgcctgcgcgacctgggcggcctg
atcgtgatcgacttcatcgacatggagtcgggcaaggcccagaaggacgtggaaacgcgc
ctgaaggacgcgctgcgccacgaccgcgcgcgcgtgcagatgggcaagatcagccgcttc
ggcctgatggagctgtcgcgccagcgcctgcgtccgtcgctgtcggagggctcgcacatc
acttgcccgcgctgcaacggcaccggccatatccgcgataccgaatcgtccgccctgcag
gtgctgcgcatcattcaggaagaggcgatgaaggaaaacaccgccgccatccactgccag
gtgccggtggaggtagccgccttcctgctgaacgagaagcgccaggaaatcaacctgatc
gagctgcgcttcaaggtcaatgtgctgctgatccccaacaagcacctggaaacgccgcac
tacaagctggagcgcctgcgccacgacgacccgcgcctggaagagagcaccgccagctac
cgcatggccgaggctgccgccaaggaactggaagccgacaccagctacagcagccgccgc
aaggaagaagccaagccgcgccaggaagccgcggtcaagggcatcaccccggaacagccg
gcgccggtatcggtgccgcgccccgagcgcgcgcccaagccggaagccccggtcgccccg
cccgtgccggccacccagccggtggtcagcggcggctttatcgcctggctgaagggcctg
ttcggtgcccgtccggcgaccccgccggtggtggagccggccaagccggcagctgcaacc
gagacccgtagcgccgaaggccggcgcgagcgcggccagcgcggcgaaggccgcggccag
cgtggtgagcgtggcgaccgcgccgaacgtggtgagcgcacggaacgtggtgagcgtggc
gagcgccagggccgtggccagcgcggcgaccgtgccgagcgcgcggaacgtggtgagcgc
cagggtgccgagcgcggcgagcaacgcgagggccgtggcgaacgccagggccgccagccg
cgccagcaaggtgaaggccaggccaccccggccctggcccgccagggcgaggccgtgcaa
gccgagcgtgcccagggcgaacgcgtggagggccgtcaggaaggccgccgcgaccgcaac
caggaacgccgcgagcgccagcgtgaacgccagcgcgaacgcagtgaactgcgagaagcc
gaagccggtgaagcaccgcagccggaagccatcgccgccgcccaggccctgggcgtgctg
ccccaggccgtgaccgaagagacgcaagccgtccgcgccgagctgccggaaggtgccgag
agcgccgccgagaccgctgagggcgaagagcgccgtcgccgcaaccgccgtggccgcaac
cgctatcgccgtgagcgcgacgagtcggcgcaaggtgcgcagggtgaaggtgaaggcgaa
ggcgacgaagaagccgccgctgccgaaggcgttgccccggtgcgcgctgaagccgccgtg
ccggccgagcccgcaccgcaagctgccgtggccgtggccgccgcagccgaggccgtcgaa
gcgatccgcatcgccgtgccggaagacgtggcgcccgcgccggtcgccgaggccgccccg
ctgaccgcgccggctgccgagcccgtgccccagcaagctgccccggtagccgttgccgtc
acagaagccgttgccgccgaagcgatcgtcgaaaccaccgcaagcgtggccgccgaagcg
gctccggtcgtgccggcacctgccgctgcaccggtcgccgcccctgtggccgaagccgca
ccggccgaggtgtccgcccctgcagccccggtggttgctgcagcgccggccgcaccggcg
gcgtcggccaccccggcagcactggagaacctggaaccgatgctggccaccgccggcctg
caatgggtccataccgacagcgacaagctgcgttcggcccaggaagccgccgcccgcatg
gcgcccgccccgcgcgtgcagcgcgagcgcaaggcgctgccgccgctgccccacggcccg
atgatcctggtggaaaccggtggccgcgaagtggagatggcatcgcagcagtaa
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