Cupriavidus sp. KK10: KB879_29815
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Entry
KB879_29815 CDS
T08941
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
cuk
Cupriavidus sp. KK10
Pathway
cuk03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
cuk00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
KB879_29815 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cuk03021
]
KB879_29815 (rpoC)
03400 DNA repair and recombination proteins [BR:
cuk03400
]
KB879_29815 (rpoC)
Enzymes [BR:
cuk01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
KB879_29815 (rpoC)
Transcription machinery [BR:
cuk03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
KB879_29815 (rpoC)
DNA repair and recombination proteins [BR:
cuk03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
KB879_29815 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Biotin_lipoyl_2
Apocytochr_F_C
Peptidase_M23
Motif
Other DBs
NCBI-ProteinID:
QUN28182
LinkDB
All DBs
Position
complement(6387626..6391873)
Genome browser
AA seq
1415 aa
AA seq
DB search
MKALLDLFKQVQQEEQFDAIKIGLASPEKIRSWSYGEVKKPETINYRTFKPERDGLFCAK
IFGPIKDYECLCGKYKRLKHRGVICEKCGVEVTLAKVRRERMGHIELAAPTAHIWFLKSL
PSRLGMVLDMTLRDIERVLYFEAFVVIEPGMTPLKKSQIMSEDDYLAKCDEYGEGEFVAM
MGAEGIRELLRGIDIEKQIEQIRAELQATGSEAKIKKFAKRLKVLEAFQRSGIKPEWMIL
EVLPVLPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLELKAPEIIVRNEKRML
QEAVDSLLDNGRRGKAMTGANKRPLKSLAEMIKGKGGRFRQNLLGKRVDYSGRSVIVVGP
TLKLHQCGLPKLMALELFKPFIFHKLETMGIATTIKAAKKEVESQTPVVWDILEEVIREH
PVMLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAFNADFDGDQMAVHVPLSLEAQME
ARTLMLASNNVLFPANGDPSIVPSQDVVLGLYYTTRDKINGRGEGMTFADISEVIRAYEN
KEVELASRVNVRITEYELVDKDAEGDARFAPKITLQATTVGRAILSEILPKGLPFSVLNK
PLKKKEISRLINTAFRKCGLRETVIFADKLLQSGFRLATRAGISIAIDDMLVPPQKEKII
AEASAKVKEYDKQYMSGLVTDQERYNNVVDIWGAAGDQVGKAMMEQLQHEDVVDREGKTV
KQESFNSIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFI
STHGARKGLADTALKTANSGYLTRRLVDVTQDLVVVEDDCGTSNGVAMKALVEGGEVIEA
LRDRILGRVTVADVVNPETQETAIEAGTLLDEDLVELIDNIGVDEVKVRTPLSCDTRYGL
CGKCYGRDLGRGVLVNSGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASRAAVASSVEAKA
TGTVRFTATMRYVTNAKGELIVISRSGEALITDDHGRERERHKIPYGATLLVQDGQAIKA
GTQLATWDALTRPIVSEYTGTTKFENVEEGVTVAKQMDEVTGLSTLVVIDAKRRTAATKG
IRPQVKLLDASGQEVKIPGTDHSVTIGFQVGALITVKDGQQVHVGEVLARIPTESQKTRD
ITGGLPRVAELFEARSPKDAAVLAEVTGTTSFGKDTKGKQRLVITDLDGNAHEFLIAKEK
QVLVHDGQVVNKGEMIVEGPADPHDILRLKGIEELAHYIVDEVQDVYRLQGVKINDKHIE
VIVRQMLRRVQIADVGDTKFIPGEQVERSELLDENDRVIAEGKRPATYENLLLGITKASL
STDSFISAASFQETTRVLTEAAIMGKTDDLRGLKENVIVGRLIPAGTGLAYHRARKAREA
SERERAQAIAEEEQSLFIEPAPVVQATTEGEGDNV
NT seq
4248 nt
NT seq
+upstream
nt +downstream
nt
atgaaagcattgctcgatctctttaagcaggtacagcaggaagagcagttcgacgcgatc
aagatcggcttggcctcgcccgagaagatccgttcgtggtcgtacggcgaagtcaagaag
ccggaaacgatcaactaccgtaccttcaagccggaacgcgacggcctgttctgcgccaag
atctttggcccgatcaaggactacgagtgcctgtgcggcaagtacaagcgcctgaagcac
cgtggcgtgatctgcgagaagtgcggcgttgaagtgacgctggccaaggtgcgccgcgag
cgcatgggccacatcgaactggccgcgccgaccgcgcacatctggttcctgaagtcgctg
ccgtcgcgcctgggcatggtcctggacatgacgctgcgcgacatcgagcgcgtgctgtac
tttgaagcattcgtggtgatcgaacccggcatgaccccgctcaagaagagccagatcatg
tccgaagacgactacctggcgaagtgcgacgagtacggcgagggcgagttcgtcgccatg
atgggtgccgagggcatccgtgagctgctgcgcggcatcgacatcgagaagcagatcgaa
cagatccgcgccgagctgcaggccaccggctccgaagccaagatcaagaagttcgccaag
cgcctgaaggtgctcgaggccttccagcgttcgggcatcaagcccgagtggatgatcctc
gaagtgctgccggtgctgccgcccgagctgcgcccgctggtgccgctggacggcggccgc
ttcgcgacctcggacctgaacgacctgtatcgccgcgtcatcaaccgtaacaaccgcctc
aagcgcctgctggagctgaaggcgcctgaaatcatcgtgcgcaacgaaaagcgcatgctg
caggaagcggttgactcgctgctggacaacggccgtcgcggcaaggcgatgactggcgcc
aacaagcgtccgctgaagtccctggctgaaatgatcaagggcaagggcggccgtttccgt
cagaacctgctgggcaagcgcgtcgactactcgggccgttcggtcatcgtggtgggcccg
accctcaagctgcaccagtgcggcctgcccaagctgatggcgctcgagctgttcaagccc
ttcatcttccacaagctggaaacgatgggcatcgccaccaccatcaaggcggcgaagaag
gaagtggaaagccagaccccggtggtgtgggacatcctcgaagaggtgatccgcgagcac
ccggtgatgctgaaccgtgcgccgacgctgcaccgcctgggtatccaggcgttcgagccg
gtgctgatcgaaggcaaggccatccagctgcacccgctggtctgcgcggcgttcaacgcc
gacttcgacggtgaccagatggctgttcacgtcccgctgtcgctggaagcgcagatggaa
gctcgcacgctgatgctggcttccaacaacgtgctgttcccggccaacggcgacccgtcg
atcgtgccgtcgcaagacgtggtgctgggtctgtactacacgacccgcgacaagatcaac
ggccgcggcgagggcatgacctttgccgacatcagcgaagtgatccgcgcctacgagaac
aaggaagtcgaactggcttcgcgcgtgaacgtgcgtatcaccgagtatgagctggtcgac
aaggacgccgagggcgacgcccgtttcgcacccaagatcacgctgcaggccaccacggtc
ggccgcgcgatcctgtccgagatcctgcccaagggcctgccgttctcggtgctgaacaag
ccgctcaagaagaaggaaatctcgcgcctgatcaacaccgcgttccgcaagtgcggtctg
cgcgagaccgtgatcttcgccgacaagctgctgcagtcgggcttccgcctggcaacccgc
gccggtatctcgatcgccatcgacgacatgctggtgccgccgcagaaggaaaagatcatc
gccgaggcctcggccaaggtgaaggaatacgacaagcagtacatgtcgggtctggtgacc
gaccaggaacgctacaacaacgtcgtggacatctggggcgccgccggcgaccaggtgggc
aaggcgatgatggagcagctccagcacgaagacgtggtcgaccgcgaaggcaagaccgtg
aagcaagagtcgttcaactccatctacatgatggccgactcgggcgcacggggttccgcc
gcgcagatccgccagctggccggtatgcgtggcctgatggcaaagccggacggctcgatc
attgaaacgccgatcacggcgaacttccgtgaaggcctgaacgttctgcagtacttcatc
tcgacccacggcgcacgtaagggcctggccgatacggcactgaagaccgcgaactcgggt
tacctgacccgtcgtctggtcgacgtgacgcaggatctggttgtggtggaagacgattgc
ggcacctccaacggcgtggccatgaaggccctggtcgaaggcggtgaagtgatcgaagcc
ctgcgcgaccgtatcctcggccgtgtgaccgtggccgacgtggtgaaccctgaaacccag
gaaaccgcgatcgaagccggcacgctgctggatgaagacctggttgagctgatcgacaac
atcggcgtggacgaagtcaaggtccgcaccccgctgtcgtgcgacacgcgctacggcctg
tgcggcaagtgctacggccgcgacctgggccgcggcgtgctggtgaactccggcgaagcg
gttggcgtgattgccgcccagtcgatcggtgagccgggcacgcagctgaccatgcgtacg
ttccacatcggtggtgcggcatcgcgtgcggcagtggcgtcgagcgtggaagccaaggca
accggtaccgtgcgtttcacggcgaccatgcgttacgtcaccaatgcgaagggcgaactg
atcgtcatctcgcgttcgggcgaggcgctgatcaccgacgaccacggccgcgagcgcgaa
cgccacaagatcccgtacggcgccacgctgctggtgcaggacggccaggccatcaaggct
ggcacgcagctggccacgtgggacgcgctgactcgcccgatcgtttcggaatacaccggc
acgaccaagttcgagaacgtcgaagaaggcgtgaccgtcgccaagcagatggacgaagtc
accggcctgtcgaccctggtggtgatcgacgccaagcgccgcacggctgcaaccaagggc
atccgcccgcaggtgaagctgctcgacgccagcggccaggaagtgaagatcccgggcacg
gaccattccgtgaccatcggcttccaggtcggcgcgctgattaccgtgaaggatggccag
caggtgcacgtgggtgaagtgctcgcgcgtatcccgaccgaatcgcagaagacccgcgac
attaccggtggtctgccgcgtgtggccgagctgttcgaagcgcgttcgccgaaggacgcc
gccgtgctggcggaagtcaccggcacgacctcgttcggcaaggacaccaagggcaagcag
cgtctggtcattaccgacctggacggcaatgcccacgagttcctgatcgcgaaggaaaag
caggtgctggtgcacgacggccaggtggtgaacaagggcgaaatgatcgtggaaggtccg
gcggacccgcacgacatcctgcgcctgaagggcatcgaagagctggcgcactacatcgtg
gacgaagtccaggacgtgtaccgtctgcagggcgtgaagatcaacgacaagcacatcgaa
gtgattgttcgtcagatgctgcgccgcgtgcagatcgccgatgtcggcgacaccaagttc
atcccgggtgaacaggtggagcgttcggaactgctcgacgagaacgaccgcgtgatcgcc
gaaggcaagcgtccggccacgtacgagaacctgctgctgggtattaccaaggcgtcgctg
tcgaccgacagcttcatctcggcggcatcgttccaggaaaccacgcgcgtgctgaccgaa
gccgcgatcatgggcaagaccgacgacctgcgtggtctgaaggaaaacgtgatcgtcggc
cgtctgatcccggccggtaccggcctggcctaccaccgcgcccgcaaggcgcgcgaggcc
tccgagcgcgaacgcgcccaggcgatcgccgaagaagagcagtcgctcttcatcgagccg
gcgccggtggtgcaggcgacgaccgaaggcgaaggcgacaacgtctga
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integrated database retrieval system
