Cupriavidus sp. KK10: KB879_31445
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Entry
KB879_31445 CDS
T08941
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
cuk
Cupriavidus sp. KK10
Pathway
cuk02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
cuk00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
KB879_31445 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cuk03021
]
KB879_31445 (rpoD)
Transcription machinery [BR:
cuk03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
KB879_31445 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r3
Sigma70_r1_1
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
Exonuc_VII_L
Sigma70_r4_2
RepB
GTP_EFTU
SPO22
Motif
Other DBs
NCBI-ProteinID:
QUN32809
LinkDB
All DBs
Position
p1:complement(52697..54685)
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AA seq
662 aa
AA seq
DB search
MAKPVRDISVSRVIAVTSKAGRRAPKEKTQAVTIPLDIASMARQEEERQRQMRALIALGR
ERGYLTHADINDHLPDNFTQTAAMETIVGTFSDMGVAVYEQAPDAETLLLNDAAAAAASD
DQADEEAEAALSTVDSEFGRTTDPVRMYMREMGARELLTRAGEIEIAKRIEDGLQDMIQA
IATCPSVVSTILVDADRIVAGELRIDELVAGISDDVNESEMTLESEEVEEKADASDDDPD
RDDVEMDAGDPETTNAARLEQLTSDSLAVFARVRALFEQLSDVPVTGKTRSAAVAQFRSA
IQRELAPIRFTARTIDRLCASVRAQITEVRAIERGILEVAVDRCGMPRDAFVESFPGHET
ELTWTSRMAATSRQFCTALERHLPAIQAGQQKLIEIEARVSLPLQQLKQINRQMVAAELK
MRQAKREMIEANLRLVISIAKKYVNRGMQFLDLIQEGNIGLMRAVDKFEYRRGWKFSTYA
TWWVRQAVTRALADQARTIRVPVHMIEMVNKLNRISREFLQQTGQEAHPAILAERMEMSE
EKVRSILRIARQPVSLETPVGDDADATLGDMIEDVSASSPTEAAIHANMRAAIDEALDEL
SPREAKVLRMRFGLDTTSDHTLEEVGKQFDVTRERIRQIESKAMRKLMHPSRADKLRPFL
ER
NT seq
1989 nt
NT seq
+upstream
nt +downstream
nt
ttggcaaagccagttcgcgacatttcagtgtcccgcgtgatcgcggttacgtcaaaagcc
ggccgccgcgcgccaaaggaaaagacccaggccgtcacaataccgctggacatcgcatca
atggcgcgccaggaggaggagcgtcaacgccagatgcgcgcgctgatcgcgcttggccgt
gagcgcggctatctcacccacgcggacatcaacgatcacctgcccgacaactttacgcaa
actgctgcgatggagacgatcgtcggcacattcagcgacatgggggtggccgtgtacgag
caggcgccggacgcagagacgctcctgctaaacgatgccgcggccgccgcggcatccgac
gatcaggcggacgaggaagcggaagctgcactgtcgaccgtcgattccgaattcgggcgc
actactgatccggttcggatgtacatgcgtgaaatgggtgcccgcgaactgctgacccgc
gctggcgaaatcgagatcgcaaaacgcatcgaagacggcctgcaggacatgattcaggcg
atcgccacgtgtccgtcggtcgtgtccacgattcttgtagatgcggaccgcatcgttgcc
ggcgaactgcgtatcgacgaactggtcgctggcatcagcgacgacgtgaacgaaagcgaa
atgacgctggagtccgaagaggttgaagagaaagcagacgcctccgacgatgacccagac
cgtgacgacgttgaaatggacgccggcgatccggagacaacgaacgcggcccgcctcgaa
caactcacgagcgacagtcttgcggttttcgcgcgcgtgcgcgcactgttcgagcagttg
tcggatgtacccgttactggcaaaacccgttccgcggccgttgcgcaatttcgctcggcg
atccagcgcgaactggcgccgatccgctttacggccagaaccatcgaccgcctgtgcgcc
agtgtgcgcgcacagattactgaggttcgtgcaatcgaacgcggcatcctggaggtcgcc
gtcgaccgttgcggcatgccacgcgatgcgtttgttgagtcgttcccgggccacgagacc
gaacttacatggaccagccgcatggcggcgacttcgcggcaattttgcacggcgcttgag
cgacatctgccggccattcaggccgggcagcagaaactcatcgagatcgaggcacgggtc
tcgctgccactccagcagctcaagcagatcaaccgccagatggttgccgcggagttgaaa
atgcggcaggccaagcgggagatgatcgaagcgaatcttcgtcttgtcatttcaatcgcc
aagaaatacgtcaaccgcggcatgcagttcctggatctgatccaggaaggcaatatcggc
ctgatgagggcggtggacaagttcgaataccggcgcggctggaagttttcgacgtacgcc
acttggtgggtccgtcaggccgtcacgcgcgcgcttgctgatcaggcgcgcaccattcgt
gtgccggtgcatatgatcgagatggtcaacaagctgaaccggatttcgcgcgaattcctg
caacagacgggacaggaagcgcatcccgctatcctcgcggagcgcatggagatgtccgag
gaaaaagtgcgcagtatcctcaggatcgcgaggcaacctgtctcgctcgagacccctgtg
ggcgacgatgccgacgcgacgctcggtgacatgattgaggatgtctctgcgagttcacca
actgaggccgcgattcacgcgaacatgcgcgccgcgatcgatgaggcactcgacgagttg
tcgccgcgtgaggccaaggtcctgcggatgcgattcgggctcgatacgacctctgaccac
acgcttgaagaggtcggcaagcagttcgacgtgacccgcgagcggatccgtcagattgaa
agcaaggcgatgcgcaagctaatgcatcccagtcgcgctgacaagttgaggccctttctt
gagcgctga
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